Showing : DEs • reset
0
votes
1
reply
620
views
Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 3.4 years ago by 42k • written 3.4 years ago by ▴ 10
0
votes
1
reply
511
views
Design structure
DESeq2 des
updated 17 months ago by 42k • written 18 months ago by • 0
0
votes
1
reply
570
views
Design Matrix Singularity Error
DES DESIGN
updated 19 months ago by 42k • written 20 months ago by • 0
2
votes
9
replies
402
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 13 days ago by 65k • written 14 days ago by • 0
0
votes
1
reply
137
views
Bioinformatics student
Des DESeq2
updated 27 days ago by • 0 • written 27 days ago by • 0
2
votes
2
replies
231
views
With DESeq2 "Not full rank" Error with design
DESeq2 DEs
7 weeks ago feather-W • 0
6 results • Page 1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
That ll be helpful. Thank you.
Comment: Log-cpm values from limma by Shaimaa Gamal • 0
I have performed RUVg correction and extracted W, factors of unwanted variation. According to limma guide, > In the limma approach to RNA…
Comment: DSS CpG coverage threshold by j.gilbert • 0
Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Segmentation is of the whole genome, I'll write some code for doing this later today.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Awards • All
Popular Question to ATpoint ★ 4.1k
Teacher to Michael Love 42k
Popular Question to Haibo Liu • 0
Popular Question to HS ▴ 10
Popular Question to DevelopingHippo • 0
Locations • All
United States, 1 minute ago
Melbourne, Australia, 8 minutes ago
United States, 22 minutes ago
Spain, 32 minutes ago
India, 42 minutes ago
Traffic: 725 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6