Bioconductor DEs

Showing : DEs • reset

votes

620

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DESeq2 DES

updated 3.4 years ago by Michael Love 42k • written 3.4 years ago by heikki.sarin ▴ 10

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570

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DES DESIGN

updated 19 months ago by Michael Love 42k • written 20 months ago by mike • 0

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511

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DESeq2 des

updated 17 months ago by Michael Love 42k • written 18 months ago by Devin • 0

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replies

401

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 13 days ago by James W. MacDonald 65k • written 13 days ago by Alexandre • 0

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replies

231

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DESeq2 DEs

7 weeks ago feather-W • 0

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137

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Des DESeq2

updated 26 days ago by hemantcnaik • 0 • written 26 days ago by Sahar • 0

6 results • Page 1 of 1

Recent ...

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…

Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0

Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

> Any suggestions for methylation data segmentation? I think the same segmentation can be used.

Comment: deseq2 results by swbarnes2 ★ 1.3k

Cross-posted https://www.biostars.org/p/9594331/#9594458

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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Teacher to Michael Love 42k