Bioconductor DeSeq2

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DESeq2 DifferentialExpression

updated 3 hours ago by ATpoint ★ 4.1k • written 3 hours ago by sajadahmad41454 • 0

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DESeq2 rnaseqGene Normalization

updated 1 day ago by ATpoint ★ 4.1k • written 1 day ago by sajadahmad41454 • 0

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156

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DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation

2 days ago • updated 7 hours ago sajadahmad41454 • 0

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137

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DESeq2

updated 5 days ago by Michael Love 42k • written 6 days ago by Zainab ▴ 10

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242

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DESeq2 design coldata

updated 6 days ago by swbarnes2 ★ 1.4k • written 7 days ago by arfranco ▴ 130

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203

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RNA-seq DESeq2

updated 5 days ago by ATpoint ★ 4.1k • written 6 days ago by Reza • 0

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257

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DESeq2

updated 2 days ago by ATpoint ★ 4.1k • written 8 days ago by angelathuynh5 • 0

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1.3k

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DESeq2 SpikeIn Normalization

updated 31 minutes ago by maria.soler • 0 • written 15 months ago by kalavattam ▴ 10

8 results • Page 1 of 1

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Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0

Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…

Answer: Differential gene expression analysis results by ATpoint ★ 4.1k

Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…

Comment: deseq2 results by sajadahmad41454 • 0

thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.

Comment: deseq2 results by swbarnes2 ★ 1.4k

It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…

Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0

Thank you very much, Gordon. I'll give voomLmFit a go!

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Comment: deseq2 results

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie

Answer: Extremely small p-values using Limma for proteomic data

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