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DeSeq2
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 6 days ago by
swbarnes2
★ 1.4k • written 7 days ago by
arfranco
▴ 130
2
votes
3
replies
206
views
Too many significant genes when integrating gtex and tcga
RNA-seq
DESeq2
updated 5 days ago by
ATpoint
★ 4.1k • written 7 days ago by
Reza
• 0
1
vote
1
reply
142
views
Handling multiple differential expression comparisons
DESeq2
updated 5 days ago by
Michael Love
42k • written 7 days ago by
Zainab
▴ 10
1
vote
3
replies
261
views
Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
DESeq2
updated 2 days ago by
ATpoint
★ 4.1k • written 8 days ago by
angelathuynh5
• 0
0
votes
1
reply
49
views
normalization using Deseq2
DESeq2
rnaseqGene
Normalization
updated 1 day ago by
ATpoint
★ 4.1k • written 1 day ago by
sajadahmad41454
• 0
0
votes
1
reply
45
views
Differential gene expression analysis results
DESeq2
DifferentialExpression
updated 11 hours ago by
ATpoint
★ 4.1k • written 11 hours ago by
sajadahmad41454
• 0
0
votes
2
replies
1.4k
views
How to use spike-in information (sequences from another species) with DESeq2::DESeq()
DESeq2
SpikeIn
Normalization
updated 8 hours ago by
maria.soler
• 0 • written 15 months ago by
kalavattam
▴ 10
2
votes
5
replies
175
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
2 days ago • updated 15 hours ago
sajadahmad41454
• 0
8 results • Page
1 of 1
Recent ...
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Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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