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DiffBind
•
reset
0
votes
0
replies
30
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
1 day ago
Dinesh
• 0
0
votes
0
replies
74
views
dba.plotProfile() plotting and interpretation
DiffBind
4 days ago
Henry
▴ 10
0
votes
0
replies
53
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
6 days ago • updated 5 days ago
yvonneh
• 0
0
votes
0
replies
49
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
6 days ago
Ian D.
▴ 70
0
votes
3
replies
162
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
7 days ago • updated 5 hours ago
Ian D.
▴ 70
1
vote
1
reply
121
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 8 days ago by
Michael Love
42k • written 8 days ago by
marcusn
• 0
0
votes
1
reply
141
views
ATACseq merge peaks
DiffBind
updated 12 days ago by
ATpoint
★ 4.1k • written 13 days ago by
Shloka
• 0
0
votes
4
replies
242
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
21 days ago • updated 18 days ago
lonn
• 0
0
votes
0
replies
96
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
22 days ago
Virangika
• 0
2
votes
2
replies
172
views
[DiffBind] Obtaining normalization factors
DiffBind
25 days ago • updated 22 days ago
Henry
▴ 10
2
votes
2
replies
392
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind
Normalization
26 days ago • updated 25 days ago
Henry
▴ 10
11 results • Page
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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DevelopingHippo
• 0
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Robert Castelo
★ 3.3k
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Gyan Prakash Mishra
▴ 10
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Gordon Smyth
50k
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WouterDeCoster
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