Showing : DiffBind • reset
2
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[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind Normalization
27 days ago • updated 26 days ago Henry ▴ 10
0
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4
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242
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Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
21 days ago • updated 18 days ago lonn • 0
2
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2
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172
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[DiffBind] Obtaining normalization factors
DiffBind
26 days ago • updated 22 days ago Henry ▴ 10
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3
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169
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More regions in union when increasing DBA$config$mergeOverlap
DiffBind
7 days ago • updated 8 hours ago Ian D. ▴ 70
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141
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ATACseq merge peaks
DiffBind
updated 12 days ago by ★ 4.1k • written 14 days ago by • 0
1
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1
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123
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Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 8 days ago by 42k • written 8 days ago by • 0
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96
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Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
22 days ago Virangika • 0
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75
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dba.plotProfile() plotting and interpretation
DiffBind
5 days ago Henry ▴ 10
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54
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DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
6 days ago yvonneh • 0
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50
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How to create consensus peak sets for each group to use in DiffBind?
DiffBind
6 days ago Ian D. ▴ 70
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need help with Diffbind multiple groups
DiffBind ChIPSeqData
1 day ago Dinesh • 0
11 results • Page 1 of 1
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Comment: deseq2 results by swbarnes2 ★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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