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Diffbind
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2
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360
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[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind
Normalization
15 days ago • updated 14 days ago
Henry
▴ 10
0
votes
1
reply
47
views
ATACseq merge peaks
DiffBind
updated 8 hours ago by
ATpoint
★ 4.0k • written 2 days ago by
Shloka
• 0
0
votes
0
replies
98
views
PCA plot for normalized counts using Diffbind
DiffBind
PCAplot
28 days ago
Ankit
▴ 20
0
votes
0
replies
99
views
How to extract the coordinate of dba.plotPCA?
DiffBind
PCA
28 days ago
feather-W
• 0
2
votes
2
replies
150
views
[DiffBind] Obtaining normalization factors
DiffBind
14 days ago • updated 10 days ago
Henry
▴ 10
0
votes
4
replies
199
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
9 days ago • updated 6 days ago
lonn
• 0
0
votes
0
replies
77
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
11 days ago
Virangika
• 0
0
votes
0
replies
84
views
DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind
ATACSeq
29 days ago
Pierre Lindenbaum
▴ 10
8 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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