Bioconductor ENmix

Showing : ENmix • reset

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2.5k

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ENmix Bioconductor rtracklayer

written 3.2 years ago by lea • 0

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667

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ENmix IlluminaHumanMethylationEPICmanifest

updated 24 months ago by shepherl 3.9k • written 24 months ago by Daphna • 0

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700

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ENmix comBat

3.1 years ago joannew • 0

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560

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ENmix

3.2 years ago joannew • 0

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850

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ENmix

updated 3.5 years ago by shepherl 3.9k • written 3.5 years ago by ycding ▴ 10

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595

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ENmix

3.5 years ago mwjnorris ▴ 10

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646

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ENmix

5.2 years ago moldach ▴ 20

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1.1k

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methylation ENmix BMIQ wateRmelon

5.2 years ago moldach ▴ 20

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985

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ENmix

written 7.7 years ago by avilella ▴ 10

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1.8k

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ENmix combat.mc illumina450k combat sva

7.8 years ago DSP • 0

10 results • Page 1 of 1

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Comment: Help with running egsea() by Chris • 0

I tried egsea.ma and got this error: gsa = egsea.ma(fit2, vector_group, probe_annotation, contrasts = contrast_matrix, gs.annots = gs.…

Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by angelathuynh5 • 0

Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…

Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square? by Gordon Smyth 50k

The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …

Comment: Method to find pathways different between 2 groups by Gordon Smyth 50k

sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Votes

Answer: confused with tximport counts abundance using salmon input

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call

Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu

Answer: Extremely small p-values using Limma for proteomic data

Answer: How to save the DEXSeq results

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Popular Question to Gyan Prakash Mishra ▴ 10