Biostar Error

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deseq2 error

updated 10 months ago by Michael Love 37k • written 5.1 years ago by anpham ▴ 40

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3.4k

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deseq2 error R estimatesizefactors zero

updated 4 months ago by LW • 0 • written 4.9 years ago by abhishek.yedugondla • 0

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157

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ExpressionSet Assay NanoString Error Data

updated 25 days ago by James W. MacDonald 60k • written 26 days ago by junli1988 • 0

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271

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error TFBSTools R

9 months ago HELEN • 0

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495

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error iPath R compilation

7 months ago wjb2130 • 0

5 results • Page 1 of 1

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Answer: Retrieve gene summary start/end in biomart query by Mike Smith ★ 5.7k

I'm not able to test this comprehensively today, but I think you're seeing this behaviour because you're asking for transcript level inform…

Answer: TPM normalization starting with read counts by Gordon Smyth 46k

> RPKM <- rpkm(y) > But this crashed pretty quickly, might be due to the big number of genes in a dataframe (more than 20,000 genes). `rpk…

Comment: using DESeq2 for ATAC analyses by eric.kern13 ▴ 10

To expand on what's written here: deseq2 can achieve roughly constant variance $C$ across genes by setting the per-gene dispersion $\phi_j$…

Comment: TPM normalization starting with read counts by ATpoint ★ 1.4k

Neither edgeR nor DESeq2 output TPM directly. TPM is easy to calculate though if counts and appropriate length info is available (https://s…

Comment: error running UniProt.ws by davi.vuko • 0

I still get the same result as above, should running BiocManager::install() do the trick?

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DEseq2 time-series design.

A: Importance of Order in Design Formula

remove microarray batch effects using Limma

On empirical Bayes of edgeR

Answer: CQN to DESeq2

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