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Conference EuroBioC2024 Bioconductor Community EuroBioC

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Europe Conference EuroBioC Events News

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talk workshop conference eurobioc poster

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conference EuroBioc News

6.1 years ago • updated 6.0 years ago Laurent Gatto 1.6k

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Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Answer: DESeq2 design for haplotype MPRA by Michael Love 43k

> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…

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Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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Popular Question to Steve Lianoglou ★ 13k