Bioconductor Exon

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DEXSeq exon_definition exon

updated 2.2 years ago by Alejandro Reyes ★ 1.9k • written 2.2 years ago by zhangpeng1202 • 0

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exon AnnotationHubData

2.4 years ago mahima.g • 0

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splicing Exon featureCounts subread DEXSeq

3.3 years ago NIK • 0

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DEXSeq exon

updated 3.5 years ago by Alejandro Reyes ★ 1.9k • written 3.5 years ago by jochen • 0

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DEXSeq exon memory dispersions estimateDispersions

5.4 years ago andreismolnikov00 • 0

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rsubread featurecounts exon mRNAseq

updated 8.3 years ago by Wei Shi ★ 3.6k • written 8.3 years ago by inah ▴ 10

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rnaseq exon quasr

updated 10.8 years ago by Steve Lianoglou ★ 13k • written 10.8 years ago by sven.schuierer • 0

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Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740

@atpoint Should I first standardise data and then average replicates?

Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0

Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…

Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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Popular Question to Assa Yeroslaviz ★ 1.5k