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Exon
•
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0
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3
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2.8k
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read count summed over exons is greater tham the gene-level read count using featureCounts
rsubread
featurecounts
exon
mRNAseq
updated 6.9 years ago by
Wei Shi
★ 3.6k • written 6.9 years ago by
inah
▴ 10
0
votes
2
replies
1.8k
views
quasR - how are exon identifiers for exon counts determined
rnaseq
exon
quasr
updated 9.4 years ago by
Steve Lianoglou
★ 13k • written 9.4 years ago by
sven.schuierer
• 0
1
vote
3
replies
1.4k
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 6.2 years ago by
rcavalca
▴ 140 • written 6.2 years ago by
xie186
• 0
1
vote
3
replies
1.3k
views
DEXSeq with large(ish) number of samples
DEXSeq
exon
memory
dispersions
estimateDispersions
4.0 years ago
andreismolnikov00
• 0
1
vote
5
replies
865
views
DEXSeq output included non-exist exons
DEXSeq
exon_definition
exon
updated 10 months ago by
Alejandro Reyes
★ 1.9k • written 10 months ago by
zhangpeng1202
• 0
0
votes
1
reply
848
views
DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
23 months ago
NIK
• 0
1
vote
1
reply
656
views
Increased number of exons in DEXSeq
DEXSeq
exon
updated 2.1 years ago by
Alejandro Reyes
★ 1.9k • written 2.1 years ago by
jochen
• 0
0
votes
0
replies
388
views
Getting the exon co-ordinates and location
exon
AnnotationHubData
12 months ago
mahima.g
• 0
8 results • Page
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Recent ...
Replies
Comment: deseq2 results
by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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