Bioconductor ExperimentalDesign

Showing : ExperimentalDesign • reset

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DESeq2 RNASeqData deseq2 ExperimentalDesign

updated 2.1 years ago by swbarnes2 ★ 1.4k • written 2.1 years ago by Sam • 0

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hypothesisTesting contrastCoding edger ExperimentalDesign expressionDifferences

updated 2.6 years ago by Gordon Smyth 53k • written 2.6 years ago by Hannes • 0

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 3.2 years ago by ATpoint ★ 5.0k • written 3.2 years ago by Mohamed ▴ 30

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ExperimentalDesign RNASeq DifferentialExpression DESeq2

updated 3.5 years ago by Michael Love 43k • written 3.5 years ago by Aurélien • 0

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SingleCellExperiment scater ExperimentalDesign scran

3.8 years ago msn ▴ 10

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ChIPSeq DiffBind ExperimentalDesign

4.8 years ago • updated 4.7 years ago SFn • 0

6 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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