Bioconductor ExperimentalDesign

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DESeq2 RNASeqData deseq2 ExperimentalDesign

updated 18 months ago by swbarnes2 ★ 1.4k • written 18 months ago by Sam • 0

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894

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hypothesisTesting contrastCoding edger ExperimentalDesign expressionDifferences

updated 2.0 years ago by Gordon Smyth 52k • written 2.0 years ago by Hannes • 0

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1.1k

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RNAseq ExperimentData RNAseq123 RNA ExperimentalDesign

updated 2.6 years ago by ATpoint ★ 4.8k • written 2.6 years ago by Mohamed ▴ 30

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1.5k

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ExperimentalDesign RNASeq DifferentialExpression DESeq2

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by Aurélien • 0

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1.3k

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SingleCellExperiment scater ExperimentalDesign scran

3.2 years ago msn ▴ 10

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1.9k

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ChIPSeq DiffBind ExperimentalDesign

4.2 years ago • updated 4.1 years ago SFn • 0

6 results • Page 1 of 1

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Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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