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GDCDownload
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Why 3 RNA-seq bams for same sample/aliquot_barcode?
manifest
GDCdownload
GenomicDataCommons
2.1 years ago
xiaofeiwang198266
• 0
0
votes
0
replies
1.5k
views
Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare
GDCDownload
3.0 years ago
Manav
• 0
1
vote
1
reply
1.4k
views
Problem downloading TCGA projects with the method "client"
bioconductor
GDCdownload
5.5 years ago • updated 5.4 years ago
sann
• 0
0
votes
0
replies
1.3k
views
GDC RNA seq files (replicates?)
gdc data
TCGA
gdcdownload
6.7 years ago
coyoung
▴ 10
0
votes
0
replies
1.2k
views
Error in move(i, file.path(path, i)) : I could not find the file: 95a5d709-7454-4f76-84b0-a505c32baeb5 ; GDCdownload error
tcgabiolinks
gdcdownload
tcga-brca
7.7 years ago
fawazfebin
▴ 60
3
votes
5
replies
3.0k
views
GDCdownload error in TCGAbiolinks: Invalid zip name argument
tcgabiolinks
gdcdownload
unzip
updated 7.7 years ago by
Tiago Chedraoui Silva
▴ 260 • written 7.7 years ago by
fawazfebin
▴ 60
6 results • Page
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Comment: org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
by
thundernight
• 0
I'm actually having the same problem. [Spanish dictionary][1] [1]: https://spanishdictionary.cc
Comment: voomLmFit fitted log-CPM values
by
Gordon Smyth
53k
The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…
Comment: voomLmFit fitted log-CPM values
by
Lina
▴ 10
Is the output from fitted(v) in the log2 CPM scale? or CPM scale?
Answer: voomLmFit fitted log-CPM values
by
Gordon Smyth
53k
Fitted values are obtained from limma MArrayLM objects by ``` fitted(v) ```
Comment: EuroBioC2024 abstract submission is open!
by
Finnianfly
• 0
What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…
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A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
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