Bioconductor GRN

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GRN BioNERO

updated 2.5 years ago by Fabricio Almeida-Silva ▴ 40 • written 2.6 years ago by majeedaasim • 0

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grndata GRN ARACNE WGCNA

3.2 years ago Harrsha • 0

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microarray GRN gene interaction

updated 9.4 years ago by chris86 ▴ 420 • written 9.4 years ago by shaheryar • 0

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microarray gene interaction GRN r

updated 9.4 years ago by chris86 ▴ 420 • written 9.4 years ago by shaheryar • 0

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microarray gene interaction GRN

updated 9.8 years ago by Robert Castelo ★ 3.4k • written 9.8 years ago by shaheryar • 0

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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0

Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …

Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k

Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…

Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

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