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GSVA
•
reset
9
votes
7
replies
20k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 5 months ago by
amin8w
▴ 10 • written 6.8 years ago by
sina.nassiri
▴ 130
4
votes
2
replies
1.3k
views
Gene set analysis: GSVA, Z-Score, and fold-changes
GSVA
RNASeq
limma
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
Jonathan
▴ 10
3
votes
4
replies
226
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
updated 2 days ago by
Gordon Smyth
50k • written 4 days ago by
Chris
• 0
2
votes
7
replies
1.8k
views
Issue with GSVA using dgCMatrix
GSVA
updated 9 weeks ago by
Moritz
▴ 10 • written 2.9 years ago by
resa
• 0
2
votes
6
replies
1.7k
views
How can I avoid artifacts in gene set/pathway scoring by UCell and similar algorithms?
escape
UCell
GSVA
updated 5 months ago by
arina
• 0 • written 14 months ago by
Omer
• 0
1
vote
2
replies
583
views
GSVA error
GSVA
26 days ago • updated 25 days ago
Alex
• 0
1
vote
1
reply
660
views
How should I run ssGSEA Hallmark Enrichment Analysis?
ssgsea
GSVA
biotype
proteincoding
msigdb
updated 5 months ago by
Robert Castelo
★ 3.3k • written 5 months ago by
snijesh
▴ 20
1
vote
6
replies
506
views
GSVA on separate healthy and disease datasets
GSVA
updated 4 weeks ago by
James W. MacDonald
65k • written 4 weeks ago by
Lucy
▴ 60
0
votes
0
replies
83
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
11 days ago
Chris
• 0
0
votes
1
reply
410
views
GSVA exceeds 1
GSVA
updated 8 months ago by
Robert Castelo
★ 3.3k • written 8 months ago by
Heba
• 0
10 results • Page
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Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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ATpoint
★ 4.1k
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Michael Love
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