Showing : Genetics • reset
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limma: percent of variance explained
Genetics limma Genetics limma
updated 11.3 years ago by 53k • written 11.3 years ago by ▴ 90
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RNA-seq pathway analysis in Canis familiaris
RNASeq Genetics Annotation Canis familiaris gage RNASeq Genetics Annotation gage
updated 11.3 years ago by 68k • written 11.3 years ago by ▴ 140
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easyRNASeq: Number of total counts
GeneExpression RNASeq Genetics Coverage Normalization BSgenome Biobase Biostrings biomaRt
11.4 years ago Guest User ★ 13k
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Job: Bioinformatics Postdoc Position at the IMB, Mainz
Genetics DECIPHER Genetics DECIPHER
11.5 years ago Kathi Zarnack ▴ 110
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Statistical Bioinformatician/Geneticist in Oxford
Sequencing Genetics Sequencing Genetics
11.5 years ago Steve Taylor ▴ 280
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1.2k
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Conference Announcement - CAMDA 2014
Genetics Cancer Genetics Cancer
11.5 years ago Djork Clevert ▴ 210
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1.5k
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Error messege in edgeR: Error in t(y) + prior.count.scaled : non-conformable arrays
Genetics Genetics
updated 11.6 years ago by 53k • written 11.6 years ago by ▴ 10
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1.1k
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Job opening: Research Scientist in Biostatistics (Seattle, WA)
Genetics Genetics
11.7 years ago Stephanie M. Gogarten ▴ 890
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2
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1.8k
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strange layering in PCA after removeBatchEffect()
Genetics limma Genetics limma
updated 11.8 years ago by ▴ 10 • written 11.8 years ago by ▴ 90
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1.4k
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Job in statistical genetics / bioinformatics
Sequencing Genetics Sequencing Genetics
11.8 years ago Paul Leo ▴ 970
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4.6k
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Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
11.9 years ago Dan Tenenbaum ★ 8.2k
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1.6k
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Job in GWAS / Next Gen Sequencing / genetics
Sequencing Genetics Sequencing Genetics
12.0 years ago Paul Leo ▴ 970
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4
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2.2k
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DexSeq extracols option
RNASeq Microarray Genetics Annotation Normalization Infrastructure Cancer probe limma
updated 12.1 years ago by ★ 1.9k • written 12.1 years ago by ▴ 40
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2
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GeneticsPed Pedigree object creation error: recursive indexing failed at level 2
Genetics GeneticsPed Genetics GeneticsPed
updated 12.2 years ago by ★ 8.2k • written 12.1 years ago by ▴ 30
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job advertisement
Genetics Alignment Visualization Genetics Alignment Visualization
12.2 years ago Zhenyu Xu ▴ 10
1
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2
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1.4k
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Study design in DEXSeq
Genetics DEXSeq Genetics DEXSeq
updated 12.2 years ago by ★ 1.9k • written 12.2 years ago by ▴ 510
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SRAdb package - problems
Genetics SRAdb Genetics SRAdb
12.3 years ago Jack Zhu ▴ 170
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2.3k
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voom and RPKM for multi-species RNA-seq analysis
Genetics DESeq Genetics DESeq
12.3 years ago Julien Roux ▴ 90
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1
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1.2k
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Gviz problem with chr16
Genetics Gviz Genetics Gviz
updated 12.3 years ago by ★ 1.6k • written 12.3 years ago by ★ 13k
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Statistical Genetics Post-doc position available in Melbourne
Genetics Genetics
12.3 years ago Lavinia Gordon ▴ 480
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CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics Classification Regression Genetics Classification Regression
12.4 years ago CAMDA 2013 ▴ 30
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1.4k
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REDseq_question
Sequencing Genetics BSgenome BSgenome REDseq Sequencing Genetics BSgenome BSgenome REDseq
12.4 years ago Julie Zhu ★ 4.3k
0
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907
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FW: Join us for a two-day R workshop featuring bioinformatics with Bioconductor & seamless R/C++ integration.
Genetics Genetics
12.4 years ago Sparapani, Rodney ▴ 20
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1.4k
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CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
12.5 years ago CAMDA 2013 ▴ 30
0
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1.2k
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JOB: 3 year post for Postdoctoral Research Scientist in Statistical Functional Genomics at University of Oxford
Sequencing Genetics Sequencing Genetics
12.5 years ago Peter Humburg ▴ 30
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1.6k
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PhD student in Quantitative Genetic Models of Complex Traits
Sequencing Genetics Drosophila melanogaster Sequencing Genetics Drosophila melanogaster
12.6 years ago Peter Sørensen (HAG) ▴ 60
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1.1k
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Conference Announcement - CAMDA 2013
Genetics Genetics
12.7 years ago CAMDA 2013 ▴ 30
0
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1.9k
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Bioinformatician Job at Pirbright Institute
Genetics Infrastructure Genetics Infrastructure
12.8 years ago Jan T Kim ▴ 50
0
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1.4k
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Statistical Genetics Data Analyst position in Seattle
Genetics Genetics
12.8 years ago Stephanie M. Gogarten ▴ 890
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4.8k
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ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
12.9 years ago SSc Array Core ▴ 10
2
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7
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5.8k
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Extend GRanges start/end
Genetics GenomicFeatures Genetics GenomicFeatures
updated 12.9 years ago by ★ 11k • written 12.9 years ago by ▴ 510
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Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
12.9 years ago Dan Tenenbaum ★ 8.2k
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1.5k
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ChipPeakAnno - slightly different results between makeVennDiagram and findPeakOverlaps
Genetics GO ChIPpeakAnno Genetics GO ChIPpeakAnno
13.0 years ago Julie Zhu ★ 4.3k
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1.5k
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ChipPeakAnno - slightly different results between makeVennDiagram and findPeakOverlaps
Genetics ChIPpeakAnno Genetics ChIPpeakAnno
updated 13.0 years ago by ★ 1.3k • written 13.0 years ago by ▴ 510
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Postdoc position available
RNASeq Genetics RNASeq Genetics
13.0 years ago Guest User ★ 13k
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1.3k
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PostDoctoral position - Deadline is approaching
Genetics Cancer Leukemia Genetics Cancer Leukemia
13.0 years ago RNDr. Martin Pospíšek, Ph.D. ▴ 10
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1.7k
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DiffBind - error in dba.count
Genetics DiffBind Genetics DiffBind
updated 13.0 years ago by ▴ 70 • written 13.0 years ago by ▴ 510
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1.3k
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DiffBind - sample sheet for multiple replicates and peak callers
Genetics DiffBind Genetics DiffBind
13.0 years ago António Miguel de Jesus Domingues ▴ 510
0
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7
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1.8k
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Set plot title in makeVennDiagram (ChIPpeakAnno)
Genetics Genetics
updated 13.0 years ago by ★ 4.3k • written 13.0 years ago by ▴ 510
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1.1k
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Encrypting IDAT files using IDATreader
Genetics probe Genetics probe
13.0 years ago Mark Cowley ▴ 910
0
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3
replies
1.5k
views
RE ChIPPEAKANNO
miRNA Genetics ChIPpeakAnno miRNA Genetics ChIPpeakAnno
13.0 years ago Julie Zhu ★ 4.3k
0
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9
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2.6k
views
Encrypting IDAT files using IDATreader
Genetics Genetics
updated 13.1 years ago by ★ 6.6k • written 13.1 years ago by ▴ 110
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1.8k
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Bioinformatics Scientist opening in a startup on human genome interpretaion
Genetics Genetics
13.1 years ago Rong Chen ▴ 10
0
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1.2k
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How can I identify the closest transcript from a chromosome coordinate?
Microarray Genetics probe charm Microarray Genetics probe charm
13.2 years ago Yoo, Seungyeul ▴ 110
0
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831
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Merging two tilingfeaturesets into one set.
Microarray Genetics Annotation Microarray Genetics Annotation
13.2 years ago Yoo, Seungyeul ▴ 110
0
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2
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1.4k
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Operations on GenomicRanges metadata information
Genetics GenomicRanges Genetics GenomicRanges
updated 13.2 years ago by ★ 11k • written 13.2 years ago by ▴ 80
0
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1
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2.2k
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estimateDispersions in DESeq
Genetics graph DESeq Genetics graph DESeq
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 10
0
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1.4k
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Scaling color range of heatmap.2 with scaled row option
Microarray Genetics Clustering Microarray Genetics Clustering
13.3 years ago Yoo, Seungyeul ▴ 110
0
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0
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1.3k
views
Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
13.3 years ago Yoo, Seungyeul ▴ 110
0
votes
0
replies
1.3k
views
Postdoctoral position available at Stellenbosch University
Sequencing Genetics Pharmacogenomics Sequencing Genetics Pharmacogenomics
13.4 years ago Warnich, Louise <lw@sun.ac.za> ▴ 10
337 results • Page 2 of 7
Recent ...
Replies
Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k
I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…
Comment: Average biological replicates in RNA-seq by boczniak767 ▴ 740
@atpoint Should I first standardise data and then average replicates?
Comment: 3-factor DESeq2 trime-series analysis by gogeni5529 • 0
Thans you @swbarnes2 for the answer. I can see why trying to include all three parameters might be difficult to interpret. But we're inte…
Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k
What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…
Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0
Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…
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Answer: Limpa Pipeline Order
A: How barcode-plot enrichment is calculated?
A: How barcode-plot enrichment is calculated?
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
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