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Genomic
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11
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13
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4.2k
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How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic
AnnotationHub
GenomicRanges
org.Hs.eg.db
3.5 years ago • updated 3.3 years ago
rohitsatyam102
▴ 20
2
votes
3
replies
1.5k
views
Doubt about WL in cn.mops
dnacopy
dnaseq
genomic
cn.mops
cnv
updated 5.9 years ago by
Günter Klambauer
▴ 540 • written 5.9 years ago by
Cased
• 0
1
vote
1
reply
1.3k
views
GenomicRanges equivalent to bedtools cluster
IRanges
GenomicRanges
updated 3.5 years ago by
James W. MacDonald
66k • written 3.5 years ago by
kalamari
• 0
0
votes
0
replies
886
views
Job:
Data Manager - BC Cancer Research Center, Vancouver BC
computational
genomic
big data
bioinformatics
Job
5.0 years ago
jmaanaki
• 0
0
votes
2
replies
564
views
EpiDISH- from Genomic Cordinate
genomic
EpiDISH
updated 16 months ago by
shijieczheng
• 0 • written 16 months ago by
bony.dekumar
▴ 10
0
votes
2
replies
967
views
GRanges::distanceToNearest does not return distance to nearest
GenomicRanges
Genomic
2.8 years ago
Daniel Cameron
▴ 40
6 results • Page
1 of 1
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Replies
Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
by
ATpoint
★ 4.2k
I don't have an answer to the "why" but maybe a simple reimplemention will do: ```r seqs <- c("ATCATCGTATCAAAGTC", "AAAACGTATCAAAGTC", "TG…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
Guido Hooiveld
★ 4.0k
After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…
Answer: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…
Comment: GSVA function
by
Robert Castelo
★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0
by
sgomez
• 0
Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840
Votes
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
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kevin.rue
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