Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
GenomicDataCommons
•
reset
0
votes
1
reply
1.1k
views
Why 3 RNA-seq bams for same sample/aliquot_barcode?
manifest
GDCdownload
GenomicDataCommons
2.5 years ago • updated 2.4 years ago
xiaofeiwang198266
• 0
0
votes
1
reply
1.0k
views
GenomicDataCommons: Retrieve patient data for RPPA samples
TCGA
GenomicDataCommons
GDC
written 2.5 years ago by
António Miguel de Jesus Domingues
▴ 510
3
votes
2
replies
1.9k
views
How to obtain clinical data from TCGA via Bioconductor GenomicDataCommons
TCGA
GenomicDataCommons
updated 4.1 years ago by
Robert Castelo
★ 3.4k • written 4.1 years ago by
Hashirama
▴ 10
4
votes
4
replies
2.3k
views
2 questions: why there is nothing for file_ids? How could I generate a manifest file with filtering of Race and Ethnicity?
GenomicDataCommons
4.4 years ago
xiaofeiwang18266
▴ 60
0
votes
1
reply
1.4k
views
Getting number of cases added by date to TCGA project with `GenomicDataCommons`
TCGA
GenomicDataCommons
4.8 years ago
Ezgi
▴ 60
0
votes
4
replies
3.9k
views
extract TCGA barcodes and sample_type information from uuids
GenomicDataCommons
R
updated 4.4 years ago by
xiaofeiwang18266
▴ 60 • written 5.9 years ago by
gv
▴ 30
5
votes
11
replies
5.8k
views
Matching TCGA Aliquot ID to UUID or Barcode
TCGAutils
TCGAbiolinks
GenomicDataCommons
updated 6.5 years ago by
Marcel Ramos
700 • written 6.5 years ago by
Dario Strbenac
★ 1.6k
4
votes
2
replies
1.7k
views
GenomicDataCommons request timeouts when cases() %>% ... %>% results_all()
genomicdatacommons
tcga
gdc
rest
http
updated 7.0 years ago by
Sean Davis
21k • written 7.0 years ago by
mk
▴ 20
8 results • Page
1 of 1
Recent ...
Replies
Comment: Clarification on counting in Rsubread (featureCounts)
by
Gordon Smyth
53k
Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package
by
Nguyen
• 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
James W. MacDonald
68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
@mikelove Could I please ask if a similar method would work my set of samples? I have 255 samples which have been generated from 76 subject…
Comment: Clarification on counting in Rsubread (featureCounts)
by
Luca
• 0
Thanks to both of you for your helpful suggestions. The counting was already strand-specific at both the exon and gene levels. I resolved …
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
Awards
• All
Popular Question
to
Lluís Revilla Sancho
▴ 760
Commentator
to
James W. MacDonald
68k
Great Question
to
fl
▴ 20
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Aleena_Ensembl
▴ 30
Locations
• All
Canada,
just now
WEHI, Melbourne, Australia,
2 minutes ago
Seattle, WA, United States,
3 minutes ago
United States,
23 minutes ago
European Union,
30 minutes ago
Traffic: 876 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6