Bioconductor Genomicdatacommons

Showing : genomicdatacommons • reset

votes

141

views

manifest GDCdownload GenomicDataCommons

9 weeks ago • updated 8 weeks ago xiaofeiwang198266 • 0

votes

267

views

TCGA GenomicDataCommons GDC

written 3 months ago by António Miguel de Jesus Domingues ▴ 490

votes

replies

794

views

TCGA GenomicDataCommons

updated 22 months ago by Robert Castelo ★ 3.0k • written 22 months ago by Hashirama ▴ 10

votes

replies

974

views

GenomicDataCommons

2.2 years ago • updated 2.1 years ago xiaofeiwang18266 ▴ 50

votes

601

views

TCGA GenomicDataCommons

2.5 years ago Ezgi ▴ 60

votes

replies

1.8k

views

GenomicDataCommons R

updated 2.1 years ago by xiaofeiwang18266 ▴ 50 • written 3.6 years ago by gv ▴ 40

votes

replies

3.3k

views

TCGAutils TCGAbiolinks GenomicDataCommons

updated 4.2 years ago by Marcel Ramos 680 • written 4.2 years ago by Dario Strbenac ★ 1.5k

votes

replies

926

views

genomicdatacommons tcga gdc rest http

updated 4.7 years ago by Sean Davis 21k • written 4.7 years ago by mk ▴ 20

8 results • Page 1 of 1

Recent ...

Replies

Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

Comment: Biostrings error at retrieving protein sequences by Hervé Pagès 16k

Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…

Comment: Exporting DESeq2 filtered results by camillab. ▴ 10

thanks! I didn't`t notice that. I will cancel it now!

Votes

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

A: BiomaRt Arabidopsis genome unavailable

Answer: enrichKEGG

A: Effect of lfcThreshold on p-value in DESeq2

Comment: Mixed up sample info with plotPCA

Awards • All