Biostar Genomicdatacommons

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TCGA GenomicDataCommons

updated 14 months ago by Robert Castelo ★ 3.0k • written 14 months ago by Hashirama ▴ 10

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GenomicDataCommons

18 months ago • updated 17 months ago xiaofeiwang18266 ▴ 40

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TCGA GenomicDataCommons

22 months ago Ezgi ▴ 30

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GenomicDataCommons R

updated 17 months ago by xiaofeiwang18266 ▴ 40 • written 3.0 years ago by gv ▴ 40

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TCGAutils TCGAbiolinks GenomicDataCommons

updated 3.5 years ago by Marcel Ramos 620 • written 3.6 years ago by Dario Strbenac ★ 1.5k

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genomicdatacommons tcga gdc rest http

updated 4.0 years ago by Sean Davis 21k • written 4.0 years ago by mk ▴ 20

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Comment: error in ChAMP loading file by Benth • 0

Shouldn't this p-value, which I presume shows the significance of the fold change, be scale-independent? Additionally, shouldn't all of the…

Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site) by jeffbrick852 • 0

[us customer service][1] [1]: https://www.us-customer-service.com/

Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the by swbarnes2 ★ 1.2k

The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.

Comment: How to map geneIds to ENTREZIDs by stacy.genovese • 0

James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…

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A: Limma-voom with external observation weights

Limma-voom with external observation weights

Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE

Answer: How to map geneIds to ENTREZIDs

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Scholar to James W. MacDonald 62k

Commentator to vs2001 ▴ 30

Scholar to Mike Smith ★ 5.9k