Showing : GmapGenome • reset
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Can I create a GmapGenome with a relative file path?
gmapgenome gmapr fastafile
updated 7.9 years ago by ★ 11k • written 8.0 years ago by ▴ 30
3
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gmapR fills my tmp directory
gmapr gmapgenome
updated 9.3 years ago by ★ 11k • written 9.3 years ago by • 0
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4
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Create a GmapGenome from a FaFile from AnnotationHub
gmapr gmapgenome annotationhub fafile
updated 9.4 years ago by ★ 11k • written 9.4 years ago by ★ 2.1k
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Problems to create GmapGenome - gmapR
gmapR GmapGenome error create
9.9 years ago lelemraposo ▴ 10
4 results • Page 1 of 1
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Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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