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HIV
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24
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4.8k
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GenomicAlignments - extracting sequence signatures from bam file
bam file
HIV
cytosine
6.6 years ago • updated 6.5 years ago
achaillon
• 0
0
votes
0
replies
2.1k
views
Job:
Bioinformatician - The Ragon Institute of MGH, MIT and Harvard
bioinformatician job
bioinformatics
immunology
HIV
Job
7.4 years ago • updated 7.1 years ago
Ragon Institute of MGH, MIT and Harvard
• 0
0
votes
0
replies
3.8k
views
ComBat
Transcription
Genetics
Pathways
Network
Survival
Cancer
Breast
Colon
Kidney
Leukemia
HIV
11.5 years ago
SSc Array Core
▴ 10
0
votes
0
replies
1.7k
views
Post Doctoral Openings at University of Pittsburgh
Bayesian
HIV
Bayesian
HIV
11.5 years ago
Porterfield, Toni
▴ 10
0
votes
3
replies
1.4k
views
Correlation analysis
Microbiome
HIV
Microbiome
HIV
updated 12.5 years ago by
Sean Davis
21k • written 12.5 years ago by
Minh Bui
▴ 20
0
votes
1
reply
1.2k
views
eBayes error
HIV
HIV
updated 13.3 years ago by
Sean Davis
21k • written 13.3 years ago by
Reema Singh
▴ 570
0
votes
0
replies
963
views
Rtreemix (NEW package)
Cancer
HIV
Rtreemix
Cancer
HIV
Rtreemix
15.9 years ago
Jasmina Bogojeska
▴ 30
0
votes
0
replies
1.2k
views
postdoc position available at FHCRC
Cancer
HIV
Cancer
HIV
16.2 years ago
Harlan Robins
▴ 10
0
votes
0
replies
1.9k
views
Postdoctoral position for 'Statistical Methods in Bioinformatics'
Genetics
HIV
Genetics
HIV
17.4 years ago
Adrian Alexa
▴ 400
0
votes
4
replies
1.6k
views
Using limma with contrast matrix ,replicate spots, donor effects
HIV
limma
HIV
limma
updated 19.3 years ago by
Gordon Smyth
50k • written 19.3 years ago by
Pita
▴ 120
0
votes
2
replies
1.2k
views
Re: NA's
HIV
HIV
22.1 years ago
rgentleman
★ 5.5k
11 results • Page
1 of 1
Recent ...
Replies
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
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