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HTseq
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2
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851
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DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq
HTSeq
R
16 months ago • updated 15 months ago
yr542
• 0
1
vote
6
replies
1.3k
views
low counts from microRNA seq
DESeq2
microRNA
HTSeq
23 months ago
abhay.kanodia
• 0
0
votes
1
reply
981
views
Error in DESeqDataSetFromHTSeqCount
DESeq2
RNA-seq
HTseq
DESeqDataSetFromHTSeqCount
updated 2.0 years ago by
Michael Love
43k • written 2.0 years ago by
abhay.kanodia
• 0
0
votes
2
replies
936
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 2.1 years ago by
Michael Love
43k • written 2.1 years ago by
CP
• 0
0
votes
2
replies
1.3k
views
Problems while installing HTSeqGenie and gmapR
software error
HTSeq
installation
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
eric33150
• 0
12
votes
4
replies
4.8k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 5.9 years ago by
Gordon Smyth
52k • written 7.5 years ago by
wd
▴ 30
0
votes
1
reply
1.7k
views
counting with htseq script in DEXSeq
DEXSeq
dexseq_count
htseq
7.8 years ago
mat.lesche
▴ 110
1
vote
6
replies
2.1k
views
Error: could not find function "HTSeqCounts"
HTSeq
HTSeqCounts
Could not find function
DEXSeq
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
sakura.nussbaum
▴ 10
8 results • Page
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Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable
by
Gordon Smyth
52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
• 0
> dim(spe) [1] 19962 425
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
Hi, what's the output from `dim(spe)`?
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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