Bioconductor HTseq

Showing : HTseq • reset

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322

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DEXSeq HTSeq R

3 months ago • updated 12 weeks ago yr542 • 0

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781

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DESeq2 microRNA HTSeq

11 months ago abhay.kanodia • 0

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552

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 12 months ago by Michael Love 41k • written 12 months ago by abhay.kanodia • 0

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554

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DESeq2 htseq DEGseq RNASeq read

updated 13 months ago by Michael Love 41k • written 13 months ago by Paola • 0

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910

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software error HTSeq installation

updated 3.8 years ago by Martin Morgan 25k • written 3.8 years ago by eric33150 • 0

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4.2k

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voom htseq edgeR limma RNASeq123

updated 4.9 years ago by Gordon Smyth 48k • written 6.5 years ago by wd ▴ 30

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1.3k

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DEXSeq dexseq_count htseq

6.8 years ago mat.lesche ▴ 90

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1.8k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: Ensembl down??? by James W. MacDonald 64k

I normally caution against mapping between annotation sources (NCBI and Ensembl), as it usually doesn't work well. However, it is possible.…

Answer: NCBI protein conversion to CDNA and NCBI gene (in R) by James W. MacDonald 64k

I already showed you how to do this for gene symbols, and it's analogous for any other annotation ID. Please see the `AnnotationDbi` [vigne…

Comment: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

This is a large package, and when downloading and installing large packages it's often the case to get timeouts. Try setting a longer time …

Comment: How does Deseq2 deal with the row with zero when calculating size factors by ATpoint ★ 3.6k

> Because I found that if there is at least one gene without zero among all of the samples, the deseq2 runs smoothly. No, it doesn't. ``…

Comment: Obtaining rsIDs with ENSG and variant ID information by bd2000 • 0

Thank you for your answer. I've tried to download the package but it didn't work: Error in download.file(url, destfile, method, mode =…

Votes

Answer: biomaRt not working - lazy table error

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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