Bioconductor HTSeqCounts

Showing : HTSeqCounts • reset

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1.9k

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deseq2 deseq edgeR rnaseq htseqcounts

8.0 years ago Deepali • 0

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2.5k

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edger htseqcounts

updated 8.1 years ago by Gordon Smyth 53k • written 8.1 years ago by Bioinformatics ▴ 30

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2.9k

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R summarizeoverlaps htseqcounts

updated 8.3 years ago by thokall ▴ 160 • written 8.3 years ago by Walter F. Baumann ▴ 10

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5.3k

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htseqcounts edger

updated 3.4 years ago by Randy • 0 • written 8.4 years ago by mictadlo ▴ 10

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4.0k

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edger htseqcounts

updated 8.4 years ago by Gordon Smyth 53k • written 8.4 years ago by mictadlo ▴ 10

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1.6k

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htseqcounts star rnaseq

8.4 years ago Ahdee ▴ 60

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3.1k

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featurecounts SAM htseqcounts

updated 2.6 years ago by Yang Liao ▴ 450 • written 8.7 years ago by courtney.stairs • 0

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4.3k

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chipseq deseq2 htseqcounts

updated 3.0 years ago by mhashan.j ▴ 10 • written 9.0 years ago by JunLVI ▴ 40

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1.5k

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edger htseqcounts rnaseq

updated 9.1 years ago by Aaron Lun ★ 29k • written 9.1 years ago by romsdahl • 0

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1.4k

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dexseq_count dexseq htseqcounts

9.4 years ago as1023 • 0

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2.3k

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deseq2 pca tximportdata htseqcounts

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 9.7 years ago by Gordon Smyth 53k • written 9.7 years ago by Ben Mansfeld • 0

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by sakura.nussbaum ▴ 10

13 results • Page 1 of 1

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Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you so much for your help! will try to proceed with the suggestion

Comment: GSEA in R/Bioconductor course by a2a2haa • 0

Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…

Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0

By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…

Votes

Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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