Biostar HTSeqCounts

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928

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deseq2 deseq edgeR rnaseq htseqcounts

5.1 years ago Deepali • 0

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1.4k

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edger htseqcounts

updated 5.2 years ago by Gordon Smyth 47k • written 5.2 years ago by Bioinformatics ▴ 30

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1.4k

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R summarizeoverlaps htseqcounts

updated 5.4 years ago by thokall ▴ 160 • written 5.4 years ago by Walter F. Baumann ▴ 10

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3.2k

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htseqcounts edger

updated 5 months ago by Randy • 0 • written 5.5 years ago by mictadlo ▴ 10

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2.5k

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edger htseqcounts

updated 5.5 years ago by Gordon Smyth 47k • written 5.5 years ago by mictadlo ▴ 10

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892

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htseqcounts star rnaseq

5.5 years ago Ahdee ▴ 50

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1.5k

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featurecounts SAM htseqcounts

5.8 years ago courtney.stairs • 0

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2.7k

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chipseq deseq2 htseqcounts

updated 22 days ago by mhashan.j • 0 • written 6.1 years ago by JunLVI ▴ 40

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889

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edger htseqcounts rnaseq

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by romsdahl • 0

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833

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dexseq_count dexseq htseqcounts

6.5 years ago as1023 • 0

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1.3k

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deseq2 pca tximportdata htseqcounts

updated 6.7 years ago by Michael Love 39k • written 6.7 years ago by jarod_v6@libero.it ▴ 40

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deseq2 goseq htseqcounts rnaseq plant

updated 6.8 years ago by Gordon Smyth 47k • written 6.8 years ago by Ben Mansfeld • 0

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1.5k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 6.9 years ago by Martin Morgan 25k • written 6.9 years ago by sakura.nussbaum ▴ 10

13 results • Page 1 of 1

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Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0

Hi Rory, I came up with another question while analyzing my data. A scenario of analysis: Path to bam files, path to peaks files (broad pe…

Comment: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R by Yang Shi ▴ 10

Thanks for your reply sir! Here is the data ([EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv][1]). And there is the data process…

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va by davidhillis • 0

Thank you!

Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

Thank you Gordon for your time and patience, I'd try to be more specific. I've read carefully the three first chapters of `edgeR` user guid…

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va by James W. MacDonald 62k

This works for me. ``` > library(VariantAnnotation) > library(TxDb.Hsapiens.UCSC.hg19.knownGene) > txdb <- TxDb.Hsapiens.UCSC.hg19.knownGe…

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Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

A: Pathway analysis of differentially methylated CpGs

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

Answer: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

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