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HTSeq
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2
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DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq
HTSeq
R
18 months ago • updated 17 months ago
yr542
• 0
1
vote
6
replies
1.4k
views
low counts from microRNA seq
DESeq2
microRNA
HTSeq
2.2 years ago • updated 2.1 years ago
abhay.kanodia
• 0
0
votes
1
reply
1.0k
views
Error in DESeqDataSetFromHTSeqCount
DESeq2
RNA-seq
HTseq
DESeqDataSetFromHTSeqCount
updated 2.2 years ago by
Michael Love
43k • written 2.3 years ago by
abhay.kanodia
• 0
0
votes
2
replies
1.0k
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 2.3 years ago by
Michael Love
43k • written 2.3 years ago by
CP
• 0
0
votes
2
replies
1.4k
views
Problems while installing HTSeqGenie and gmapR
software error
HTSeq
installation
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
eric33150
• 0
12
votes
4
replies
4.9k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 6.1 years ago by
Gordon Smyth
52k • written 7.7 years ago by
wd
▴ 30
0
votes
1
reply
1.8k
views
counting with htseq script in DEXSeq
DEXSeq
dexseq_count
htseq
8.0 years ago
mat.lesche
▴ 110
1
vote
6
replies
2.2k
views
Error: could not find function "HTSeqCounts"
HTSeq
HTSeqCounts
Could not find function
DEXSeq
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
sakura.nussbaum
▴ 10
8 results • Page
1 of 1
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Comment: How to formulate 2 factor nested design in DESeq2
by
Mariane
• 0
Hi JK Kim, I'm having a problem similar to the one you reported. Could you please tell me how you solved this problem? Thanks
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Votes
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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