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HTseq
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0
votes
2
replies
591
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DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq
HTSeq
R
9 months ago • updated 8 months ago
yr542
• 0
1
vote
6
replies
1.0k
views
low counts from microRNA seq
DESeq2
microRNA
HTSeq
17 months ago
abhay.kanodia
• 0
0
votes
1
reply
751
views
Error in DESeqDataSetFromHTSeqCount
DESeq2
RNA-seq
HTseq
DESeqDataSetFromHTSeqCount
updated 18 months ago by
Michael Love
42k • written 18 months ago by
abhay.kanodia
• 0
0
votes
2
replies
752
views
RNA-Seq Reads Count
DESeq2
htseq
DEGseq
RNASeq
read
updated 19 months ago by
Michael Love
42k • written 19 months ago by
CP
• 0
0
votes
2
replies
1.1k
views
Problems while installing HTSeqGenie and gmapR
software error
HTSeq
installation
updated 4.3 years ago by
Martin Morgan
25k • written 4.3 years ago by
eric33150
• 0
12
votes
4
replies
4.5k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 5.4 years ago by
Gordon Smyth
50k • written 7.0 years ago by
wd
▴ 30
0
votes
1
reply
1.5k
views
counting with htseq script in DEXSeq
DEXSeq
dexseq_count
htseq
7.3 years ago
mat.lesche
▴ 90
1
vote
6
replies
1.9k
views
Error: could not find function "HTSeqCounts"
HTSeq
HTSeqCounts
Could not find function
DEXSeq
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
sakura.nussbaum
▴ 10
8 results • Page
1 of 1
Recent ...
Replies
Answer: Counter-directional LFC shrinkage
by
Michael Love
42k
It's not just the average count but also the dispersion that affects apeglm. You can try ashr for another type of shrinkage.
Comment: Error in gseDO function
by
Javier
• 0
Thank you for your answer! The thing is I'm working with 12 genes (I did also some targeted cholesterol efflux-related genes, but for sha…
Comment: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
by
Ali Osman
• 0
Thanks for your response and suggestions @atpoint ! I think implementation of the function is not a problem (I already have some options an…
Comment: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
by
Marek Gierlinski
▴ 30
Two years on and the issue is still there. Thank you Arthur for the solution!
Comment: Cannot install oligo on Fedora
by
mbassal
• 0
so whats the solution for this error?
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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