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Hi-c
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reset
1
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10
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FourC object from scratch
hi-c
HiTC
fourcseq
8.6 years ago • updated 8.4 years ago
Nicolas Servant
▴ 260
1
vote
5
replies
1.4k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
5.8 years ago
ta_awwad
▴ 10
2
votes
4
replies
1.8k
views
diffHic-package_PreparePairs-function-error:"missing chromosomes in cut site list"
diffHic
PreparePairs
Hi-c
cutGenome
8.9 years ago
rulicosentino
• 0
1
vote
4
replies
1.8k
views
Is there a way to align Hi-C half heatmaps to Gviz track?
Gviz
Hi-C
Heatmap
updated 8.0 years ago by
Nicolas Servant
▴ 260 • written 8.0 years ago by
Merienne Nicolas
▴ 120
3
votes
2
replies
2.4k
views
Best way to get HiCUP-mapped Hi-C data into diffHiC
hicup
hi-c
diffhic
homer
6.8 years ago
e.jacobson
▴ 10
0
votes
2
replies
903
views
diffHic ICE normalization PCA with NAs
diffHic
normalization
pca
NAs
HI-C
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
inzirio
▴ 10
6 results • Page
1 of 1
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Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Votes
Print Differentially Expressed Exons From Dexseq Results
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
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