Bioconductor LEA

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Bioconductor LEA

29 days ago nadia • 0

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4.2k

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pathnotwritable BiocManager LEA

updated 12 months ago by James W. MacDonald 68k • written 12 months ago by gabry.scata ▴ 10

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934

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LEA

3.5 years ago janis • 0

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916

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tracy-widom PCA LEA

3.6 years ago Bruna • 0

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858

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LEA snmf

3.8 years ago Hanan • 0

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3.6k

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lfmm LEA

updated 8 months ago by PW • 0 • written 4.5 years ago by valentinarov • 0

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2.4k

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snmf lea

updated 8.3 years ago by olivier.francois • 0 • written 8.3 years ago by renee.catullo • 0

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3.1k

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LEA Tutorial lfmm

updated 7 weeks ago by Michael Love 43k • written 8.4 years ago by afreedman405 • 0

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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