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MA-plot
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3
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1.3k
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Weird MAplot with DEGs lying along the diagonals
limma
Microarray
AgilentChip
MA-plot
Normalization
3.1 years ago
FedeXander
• 0
1
vote
4
replies
970
views
How to spot genes/transcripts in a MA-plot
ma-plot
deseq2
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
vincentpailler
• 0
0
votes
0
replies
630
views
Do my MA-plots look fine?
ma-plot
5.7 years ago
vincentpailler
• 0
2
votes
2
replies
2.3k
views
[DESeq2] Odd patterns in MA plot
deseq2
MA-plot
updated 6.1 years ago by
Ryan C. Thompson
★ 7.9k • written 6.1 years ago by
Mike
▴ 10
4 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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