Bioconductor MAIT

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mait

4.9 years ago YL • 0

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metabolomics mait specmine mass spectrometry

7.3 years ago bhgyu ▴ 30

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MAIT agricolae

updated 7.4 years ago by shepherl 4.1k • written 7.4 years ago by thomas • 0

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MAIT PLS PLSDA PlotPLS PLSModel

7.5 years ago thomas • 0

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deprecate EWCE MAIT stepwiseCM onechannelgui News

7.5 years ago shepherl 4.1k

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MAIT

updated 9.0 years ago by b.nota ▴ 370 • written 9.0 years ago by uhaifabioinfo • 0

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mait metabolomics

updated 10.0 years ago by Dan Tenenbaum ★ 8.2k • written 10.0 years ago by dilara.ally • 0

7 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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