Bioconductor MAIT

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mait

5.2 years ago YL • 0

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metabolomics mait specmine mass spectrometry

7.6 years ago bhgyu ▴ 30

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MAIT agricolae

updated 7.7 years ago by shepherl 4.1k • written 7.7 years ago by thomas • 0

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MAIT PLS PLSDA PlotPLS PLSModel

7.7 years ago thomas • 0

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deprecate EWCE MAIT stepwiseCM onechannelgui News

7.8 years ago shepherl 4.1k

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MAIT

updated 9.3 years ago by b.nota ▴ 370 • written 9.3 years ago by uhaifabioinfo • 0

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mait metabolomics

updated 10.2 years ago by Dan Tenenbaum ★ 8.2k • written 10.2 years ago by dilara.ally • 0

7 results • Page 1 of 1

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Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by caroline.zanchi ▴ 10

Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…

Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by James W. MacDonald 68k

The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…

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Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

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