Showing : onechannelgui • reset
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News: Initial List of Deprecated Packages for Bioc3.6
deprecate EWCE MAIT stepwiseCM onechannelgui News
6.7 years ago shepherl 3.8k
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problem with oneChannelGUI
onechannelgui exon array analysis R
8.5 years ago anna.dolnik • 0
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3
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11k
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How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 8.8 years ago by ▴ 830 • written 8.8 years ago by ▴ 10
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News: RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq mirna onechannelgui chimera News
9.3 years ago raffaele calogero ▴ 500
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oneChannelGUI - setting APT tools folder
software error microarray onechannelgui
9.5 years ago nextgenseq.bioinfo • 0
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859
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Introductory workshop for RNA-seq 27-28 March 2013, Torino, Italy
Network oneChannelGUI Network oneChannelGUI
11.2 years ago raffaele calogero ▴ 500
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1000
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problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
12.1 years ago Manuela Di Russo ▴ 70
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998
views
Basic question about GENE 1.0 ST
biomaRt oneChannelGUI biomaRt oneChannelGUI
updated 12.3 years ago by ▴ 60 • written 12.3 years ago by ▴ 200
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1.5k
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conditions to apply BH correction
oneChannelGUI oneChannelGUI
updated 13.0 years ago by ▴ 70 • written 13.0 years ago by ▴ 10
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reply
959
views
Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 13.1 years ago by ▴ 200 • written 13.1 years ago by ▴ 500
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1.0k
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Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 13.1 years ago by 25k • written 13.1 years ago by ▴ 200
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1.1k
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Problems running oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
updated 13.4 years ago by ▴ 910 • written 13.4 years ago by ▴ 200
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1.9k
views
oneChannelGUI
Rgraphviz affylmGUI oneChannelGUI Rgraphviz affylmGUI oneChannelGUI
updated 13.4 years ago by ▴ 500 • written 13.4 years ago by ▴ 200
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization probe oneChannelGUI Microarray Normalization probe oneChannelGUI
13.7 years ago rcaloger ▴ 500
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization GO probe oneChannelGUI Microarray Normalization GO probe
13.7 years ago ifig319@ifi.csic.es ▴ 10
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944
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Different result from gcrma function by using command line gcrma, affylmGUI and oneChannelGUI.
gcrma affylmGUI oneChannelGUI gcrma affylmGUI oneChannelGUI
13.7 years ago Lin Ying ▴ 10
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1.6k
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oneChannelGUI and Affymetrix 1.0 ST arrays
GO probe oneChannelGUI GO probe oneChannelGUI
updated 13.9 years ago by ▴ 500 • written 13.9 years ago by ▴ 280
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995
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Difficulty installing oneChannelGUI in Vista
Cancer affylmGUI oneChannelGUI Cancer affylmGUI oneChannelGUI
updated 13.9 years ago by 65k • written 13.9 years ago by ★ 2.0k
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Exon array annotation with limma?
Annotation oneChannelGUI Annotation oneChannelGUI
14.3 years ago Michael Imbeault ▴ 220
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15
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2.2k
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Exon array annotation with limma?
Normalization limma biomaRt oneChannelGUI Normalization limma biomaRt oneChannelGUI
updated 14.3 years ago by ▴ 500 • written 14.4 years ago by ▴ 220
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1.2k
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different normalized results using oneChannelGUI, and oligo packages
Normalization limma oligo oneChannelGUI Normalization limma oligo oneChannelGUI
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 500
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1.3k
views
different normalized results using oneChannelGUI and oligo packages
GO limma oligo oneChannelGUI GO limma oligo oneChannelGUI
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 840
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963
views
export contrast results in OneChannelGUI
limma oneChannelGUI limma oneChannelGUI
updated 14.5 years ago by ▴ 500 • written 14.5 years ago by ▴ 840
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Analysing Human Gene ST 1.0 Arrays with oligo and, oneChannelGUI yield different number of probesets
Preprocessing oneChannelGUI Preprocessing oneChannelGUI
14.5 years ago rcaloger ▴ 500
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5
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2.1k
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Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets
Preprocessing cdf oligo oneChannelGUI Preprocessing cdf oligo oneChannelGUI
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 840
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917
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Question about inspecting splices indexes
Organism probe oneChannelGUI Organism probe oneChannelGUI
14.8 years ago raffaele calogero ▴ 500
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2
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1.1k
views
Question about inspecting splices indexes (oneChannelGUI)
oneChannelGUI oneChannelGUI
14.8 years ago Guido Leoni ▴ 20
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926
views
onechannelGUI error
probe oneChannelGUI probe oneChannelGUI
14.9 years ago rcaloger ▴ 500
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838
views
onechannelGUI error,
probe oneChannelGUI probe oneChannelGUI
14.9 years ago PJARES@clinic.ub.es ▴ 30
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1.7k
views
BioStrings questions
probe oneChannelGUI probe oneChannelGUI
15.5 years ago rcaloger ▴ 500
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1.2k
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Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
15.8 years ago Luc Vallieres ▴ 20
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1.2k
views
oneChannelGUI and hugene10stv1cdf
oneChannelGUI oneChannelGUI
updated 15.9 years ago by ▴ 500 • written 15.9 years ago by ▴ 280
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3
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1.1k
views
oneChannelGUI problem
graph oneChannelGUI graph oneChannelGUI
updated 16.2 years ago by ▴ 500 • written 16.2 years ago by ▴ 320
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712
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Errors in importing cel files into oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
16.5 years ago Ester Feldmesser ▴ 60
34 results • Page 1 of 1
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Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
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Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
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