Showing : onechannelgui • reset
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News: Initial List of Deprecated Packages for Bioc3.6
deprecate EWCE MAIT stepwiseCM onechannelgui News
6.4 years ago shepherl 3.6k
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problem with oneChannelGUI
onechannelgui exon array analysis R
8.1 years ago anna.dolnik • 0
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3
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How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 8.4 years ago by ▴ 820 • written 8.4 years ago by ▴ 10
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News: RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq mirna onechannelgui chimera News
8.9 years ago raffaele calogero ▴ 500
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oneChannelGUI - setting APT tools folder
software error microarray onechannelgui
9.1 years ago nextgenseq.bioinfo • 0
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Introductory workshop for RNA-seq 27-28 March 2013, Torino, Italy
Network oneChannelGUI Network oneChannelGUI
10.8 years ago raffaele calogero ▴ 500
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problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
11.7 years ago Manuela Di Russo ▴ 70
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Basic question about GENE 1.0 ST
biomaRt oneChannelGUI biomaRt oneChannelGUI
updated 11.9 years ago by ▴ 60 • written 11.9 years ago by ▴ 200
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conditions to apply BH correction
oneChannelGUI oneChannelGUI
updated 12.6 years ago by ▴ 70 • written 12.6 years ago by ▴ 10
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889
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Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 12.7 years ago by ▴ 200 • written 12.7 years ago by ▴ 500
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Problem with oneChannelGUI
oneChannelGUI oneChannelGUI
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 200
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1.0k
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Problems running oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
updated 13.0 years ago by ▴ 910 • written 13.0 years ago by ▴ 200
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oneChannelGUI
Rgraphviz affylmGUI oneChannelGUI Rgraphviz affylmGUI oneChannelGUI
updated 13.1 years ago by ▴ 500 • written 13.1 years ago by ▴ 200
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization probe oneChannelGUI Microarray Normalization probe oneChannelGUI
13.3 years ago rcaloger ▴ 500
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization GO probe oneChannelGUI Microarray Normalization GO probe
13.3 years ago ifig319@ifi.csic.es ▴ 10
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Different result from gcrma function by using command line gcrma, affylmGUI and oneChannelGUI.
gcrma affylmGUI oneChannelGUI gcrma affylmGUI oneChannelGUI
13.3 years ago Lin Ying ▴ 10
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oneChannelGUI and Affymetrix 1.0 ST arrays
GO probe oneChannelGUI GO probe oneChannelGUI
updated 13.5 years ago by ▴ 500 • written 13.5 years ago by ▴ 280
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Difficulty installing oneChannelGUI in Vista
Cancer affylmGUI oneChannelGUI Cancer affylmGUI oneChannelGUI
updated 13.5 years ago by 64k • written 13.5 years ago by ★ 2.0k
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Exon array annotation with limma?
Annotation oneChannelGUI Annotation oneChannelGUI
13.9 years ago Michael Imbeault ▴ 220
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2.0k
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Exon array annotation with limma?
Normalization limma biomaRt oneChannelGUI Normalization limma biomaRt oneChannelGUI
updated 14.0 years ago by ▴ 500 • written 14.0 years ago by ▴ 220
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1.1k
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different normalized results using oneChannelGUI, and oligo packages
Normalization limma oligo oneChannelGUI Normalization limma oligo oneChannelGUI
updated 14.1 years ago by ★ 4.3k • written 14.1 years ago by ▴ 500
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1.2k
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different normalized results using oneChannelGUI and oligo packages
GO limma oligo oneChannelGUI GO limma oligo oneChannelGUI
updated 14.1 years ago by ★ 4.3k • written 14.1 years ago by ▴ 840
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export contrast results in OneChannelGUI
limma oneChannelGUI limma oneChannelGUI
updated 14.1 years ago by ▴ 500 • written 14.1 years ago by ▴ 840
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Analysing Human Gene ST 1.0 Arrays with oligo and, oneChannelGUI yield different number of probesets
Preprocessing oneChannelGUI Preprocessing oneChannelGUI
14.1 years ago rcaloger ▴ 500
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5
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Analysing Human Gene ST 1.0 Arrays with oligo and oneChannelGUI yield different number of probesets
Preprocessing cdf oligo oneChannelGUI Preprocessing cdf oligo oneChannelGUI
updated 14.1 years ago by ★ 4.3k • written 14.1 years ago by ▴ 840
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Question about inspecting splices indexes
Organism probe oneChannelGUI Organism probe oneChannelGUI
14.4 years ago raffaele calogero ▴ 500
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2
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951
views
Question about inspecting splices indexes (oneChannelGUI)
oneChannelGUI oneChannelGUI
14.4 years ago Guido Leoni ▴ 20
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858
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onechannelGUI error
probe oneChannelGUI probe oneChannelGUI
14.5 years ago rcaloger ▴ 500
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762
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onechannelGUI error,
probe oneChannelGUI probe oneChannelGUI
14.6 years ago PJARES@clinic.ub.es ▴ 30
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1.5k
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BioStrings questions
probe oneChannelGUI probe oneChannelGUI
15.2 years ago rcaloger ▴ 500
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1.1k
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Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
15.5 years ago Luc Vallieres ▴ 20
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1.1k
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oneChannelGUI and hugene10stv1cdf
oneChannelGUI oneChannelGUI
updated 15.5 years ago by ▴ 500 • written 15.5 years ago by ▴ 280
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3
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1.0k
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oneChannelGUI problem
graph oneChannelGUI graph oneChannelGUI
updated 15.8 years ago by ▴ 500 • written 15.8 years ago by ▴ 320
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628
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Errors in importing cel files into oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
16.1 years ago Ester Feldmesser ▴ 60
34 results • Page 1 of 1
Recent ...
Replies
Comment: Can the limma package be applied to Log2 RUV-normalized data? by Shaimaa Gamal • 0
I see. Do you recommend a certain method to get norm.factors through calcNormFactors function espcially if the downstream analysis includes…
Comment: Can the limma package be applied to Log2 RUV-normalized data? by Gordon Smyth 49k
515 samples is certainly large enough.
Comment: Correct the batch effect in methylation analysis in R by kyj2226 • 0
Thank you for your kind response Gordon! :) Have a good time at the end of the year! Best, Yujin Kim
Comment: Agilent Microarray Gene Oncology analysis gone wrong by SamGG ▴ 320
Gordon said to let coef to its default value: topTable(fit, n=20)
Comment: Can the limma package be applied to Log2 RUV-normalized data? by Shaimaa Gamal • 0
Hi Gordon, On what basis we can determine whether the dataset is large or not? I am working on a dataset of 515 samples and 5440 genes. I w…
Votes
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Answer: Correct the batch effect in methylation analysis in R
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Answer: Correct the batch effect in methylation analysis in R
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