Showing : MDSplot • reset
2
votes
8
replies
883
views
MDS Plot help in edgeR
edgeR plotmds differential gene expression MDS mdsplot
updated 2.7 years ago by 43k • written 2.7 years ago by • 0
0
votes
3
replies
830
views
error in drawing MDS plot for eset
MDSplot geneexpression insilicomerging
updated 5.5 years ago by 58k • written 5.5 years ago by ▴ 20
2 results • Page 1 of 1
Recent ...
Replies
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Gordon Smyth 43k
You need to start by doing an ordinary paired analysis.
Comment: Recalculated abundance data output table with DEseq2 by Michael Love 34k
Yes, DESeq() then results(). When you print the table it will say MLE. No we don’t have a function to do that.
Comment: Recalculated abundance data output table with DEseq2 by michael.morash • 0
Thanks for getting back to me so quickly. The final comparison we are looking to report are the effects of filtering out low count genes us…
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Field -Ye • 0
Hi Professor Smyth, Thank you for pointing me to your previous publication. I went through the verbal part and found you did pursue the DG…
Comment: Macbook M1 install genefilter failed by Michael Love 34k
Try [n] to updating packages, and "no" to install from source.
Votes
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
Error in .rowNamesDF<-(x, value = value) :duplicate row.names are not allowed DESeq2
Comment: How to build a GRangesList where each GRanges element is a CDS coordinate of gen
Awards • All
Scholar to Rory Stark ★ 4.1k
Scholar to jbnrodriguez • 0
Scholar to Yang Liao ▴ 260
Scholar to James W. MacDonald 58k
Teacher to Michael Love 34k
Locations • All
United States, just now
United States, 1 minute ago
Australia, 5 minutes ago
WEHI, Melbourne, Australia, 13 minutes ago
Durham, 17 minutes ago
Traffic: 264 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6