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plotmds
•
reset
1
vote
2
replies
979
views
loading scores using plotMDS in limma
plotMDS
limma
12 months ago • updated 11 months ago
Cen
• 0
1
vote
3
replies
2.5k
views
Making MDS plot
plotMDS
limma
updated 13 months ago by
Gordon Smyth
51k • written 13 months ago by
liujy4
• 0
2
votes
2
replies
1.4k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 2.3 years ago by
Gordon Smyth
51k • written 2.3 years ago by
Raito92
▴ 60
2
votes
2
replies
1.3k
views
plotMDS dimensions bug
limma
plotMDS
3.0 years ago
jamie.gearing
▴ 60
2
votes
8
replies
4.1k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 5.6 years ago by
Gordon Smyth
51k • written 5.6 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
774
views
Visualization of analysis of multiple cell lines
plotMDS
Cell lines
limma
updated 5.9 years ago by
Gordon Smyth
51k • written 5.9 years ago by
Alexander Azarian
▴ 30
0
votes
0
replies
982
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
6.4 years ago
Larry K.
• 0
3
votes
7
replies
6.1k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
6.6 years ago
dacaba.92
▴ 10
4
votes
6
replies
1.6k
views
EdgeR: Replicate samples diverge in MDS plot
edger
plotmds
6.8 years ago
fawazfebin
▴ 60
3
votes
1
reply
2.1k
views
column nubering plotMDS
edger
plotmds
updated 6.8 years ago by
Aaron Lun
★ 28k • written 6.8 years ago by
mictadlo
▴ 10
1
vote
1
reply
1.7k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays
sva
combat sva
batch effect
plotMDS
updated 7.9 years ago by
Jeff Leek
▴ 650 • written 7.9 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.2k
views
Is it possible to make some spheres around groups of points (plot3d) and measure distances between them?
rgl
plot3d
plotmds
8.3 years ago
Adam
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
▴ 730
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to
maltethodberg
▴ 180
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to
Michael Love
42k
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to
Leonardo Collado Torres
★ 1.1k
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to
Gordon Smyth
51k
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