Bioconductor MDS

Showing : MDS • reset

votes

replies

632

views

MDS RNA-Seq

updated 14 months ago by Gordon Smyth 48k • written 14 months ago by Pei • 0

votes

replies

856

views

plotMDS PCA RNASeq MDS

updated 18 months ago by Gordon Smyth 48k • written 18 months ago by Raito92 ▴ 60

votes

replies

3.0k

views

edgeR plotmds differential gene expression MDS mdsplot

updated 4.7 years ago by Gordon Smyth 48k • written 4.7 years ago by ilovesuperheroes1993 • 0

votes

replies

2.4k

views

edger DEG mds plot

6.1 years ago baus87 • 0

votes

replies

1.2k

views

limma methylation R covariate MDS

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by RC • 0

vote

1.4k

views

differential gene expression cmdscale mds

7.4 years ago Adam • 0

votes

replies

1.1k

views

champ MDS

7.8 years ago Eric Smith • 0

votes

replies

2.3k

views

MDS edger

updated 7.8 years ago by Gordon Smyth 48k • written 8.8 years ago by tobler • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Biostrings error at retrieving protein sequences by James W. MacDonald 63k

It depends on what kind of whitespace it is. If the whitespace is just a space, then it will work. But if it's a tab, it won't. ``` > gsub…

Comment: Biostrings error at retrieving protein sequences by nromerov • 0

If i write it like ```r gsub(" .*", "", names(protein_sequences)) ``` it will delet all the extra information if it is on the AAString…

Comment: bug in block.plsda from mixOmics? by Lluís Revilla Sancho ▴ 720

Oh, sorry for the noise, I see that just after Bioconductor 3.16 the bug is fixed in both 3.17 and in devel. Thanks for checking.

Answer: Mixed up sample info with plotPCA by Michael Love 40k

I can already tell there is code you aren't showing. For example, your `pcaData` has a variable 'group' that isn't in the previous sample i…

Comment: Biostrings error at retrieving protein sequences by nromerov • 0

Thaks a lot for your help

Votes

Answer: Mouse to Human Genes using bioconductor

Mouse to Human Genes using bioconductor

Answer: Biostrings error at retrieving protein sequences

Answer: How do I merge a list of GRanges?

Awards • All

Popular Question to Guido Hooiveld ★ 3.7k