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MDS
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Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 3 months ago by
Gordon Smyth
45k • written 3 months ago by
Raito92
▴ 60
2
votes
8
replies
1.5k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 3.5 years ago by
Gordon Smyth
45k • written 3.5 years ago by
ilovesuperheroes1993
• 0
11
votes
15
replies
1.7k
views
edgeR - MDS Plot for Count Data
edger
DEG
mds
plot
4.9 years ago
baus87
• 0
0
votes
2
replies
841
views
should i include PCs or MDSs as covariates in methylation study?
limma
methylation
R
covariate
MDS
updated 5.2 years ago by
Aaron Lun
★ 27k • written 5.2 years ago by
RC
• 0
1
vote
1
reply
1.1k
views
How to inteprate distances calculated by cmdscale?
differential gene expression
cmdscale
mds
6.2 years ago
Adam
• 0
0
votes
0
replies
845
views
ChAMP MDS 1000 most variable positions
champ
MDS
6.5 years ago
Eric Smith
• 0
4
votes
3
replies
1.8k
views
Saving MDS scores
MDS
edger
updated 6.6 years ago by
Gordon Smyth
45k • written 7.6 years ago by
tobler
• 0
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Answer: Cannot Install WGCNA
by
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3.1k
If you first install preprocessCore and then try again? `BiocManager::install("preprocessCore")` `BiocManager::install("WGCNA")` …
Answer: Why Negative value from GSVA
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hi, i guess when you say that you are using "RNA-Seq Row Count data" you mean "RNA-Seq raw count data" in the sense that the count data is …
Comment: Low Differentially Bound Sites found with DiffBind
by
gannoncottone
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I will look into plots of the data more thoroughly and see if any of the trends fit the reasons for low differential binding sites! Thank y…
Answer: Low Differentially Bound Sites found with DiffBind
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Rory Stark
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The script looks fine for a basic analysis. There are a number of *possible* reasons you may not be getting any significantly differenti…
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This is showing that all of the open chromatin changes are in the same "direction": sites that are open in the `aa` condition only. There a…
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