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insilicomerging
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table (pData(eset_NONE)[,"Study"]); table(pData(eset_NONE)[,"Disease"]);
affy
insilicomerging
5.7 years ago
pratikshasharma47
• 0
1
vote
3
replies
1.3k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 6.0 years ago by
James W. MacDonald
67k • written 6.0 years ago by
Adam_M
• 0
0
votes
1
reply
1.5k
views
InSilicoMerging error when using merge
insilicomerging
error
insilicodb
expressionset
7.9 years ago
andreas.pittroff
• 0
0
votes
3
replies
1.7k
views
error in drawing MDS plot for eset
MDSplot
geneexpression
insilicomerging
updated 8.7 years ago by
James W. MacDonald
67k • written 8.7 years ago by
Shamim Sarhadi
▴ 20
4
votes
8
replies
2.1k
views
Annotation Problem regarding double platform merged microarray eset using the inSilicoMerging R package, after differential expression analysis
inSilicoMerging
doubleannotation
affymetrix microarrays
limma
inSilicoDB
9.3 years ago
svlachavas
▴ 840
1
vote
2
replies
2.5k
views
Combining ExpressionSet objects : error with function merge() in "inSilicoMerging"
combine
expresiondataset
insilicomerging
9.4 years ago
alakatos
▴ 130
6
votes
4
replies
4.3k
views
Merge different datasets and perform differential expression analysis in limma
insilicomerging
batcheffect
limma
differential gene expression
bioconductor
updated 9.4 years ago by
Aaron Lun
★ 28k • written 9.4 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.0k
views
problem with insilicoMerging
insilicomerging
9.5 years ago
carol white
▴ 680
1
vote
5
replies
2.2k
views
Appropriate merge of batches of the same array to create a final total ExpressionSet
frma
bioconductor
batcheffect
Primeview
insilicomerging
updated 9.7 years ago by
Matthew McCall
▴ 830 • written 9.7 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.3k
views
'DWD' method in 'inSilicoMerging' packages
inSilicoMerging
10.1 years ago
Li Liu
▴ 100
0
votes
1
reply
1.5k
views
inSilicoMerging:::mergeCOMBAT covariates
inSilicoMerging
inSilicoMerging
updated 10.6 years ago by
Quentin De Clerck
▴ 10 • written 10.6 years ago by
François Lefebvre
▴ 50
0
votes
6
replies
2.6k
views
DWD method for batch effect removal
inSilicoMerging
inSilicoMerging
updated 11.4 years ago by
Dan Tenenbaum
★ 8.2k • written 11.4 years ago by
Li Liu
▴ 100
0
votes
2
replies
1.8k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
11.5 years ago
Ed Siefker
▴ 230
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Comment: Cannot install GO.db and org.Hs.eg.db
by
Gabriel
• 0
The downloaded source packages are in 'C:Users\gabri\AppData\Local\Temp\RtmpailNer\downloaded_packages' Installation paths not writeable, …
Comment: Feature Counts - potential bug with outfile.jcounts
by
chris2.a.white
• 0
Hi Gordon, Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be. Give…
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2
by
Michael Love
43k
I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…
Answer: Feature Counts - potential bug with outfile.jcounts
by
Gordon Smyth
52k
The behavior that you have documented is expected and is explained in the featureCounts documentation. The first thing to understand is th…
Answer: Feature Counts -R XS Read Assignment Tag
by
Gordon Smyth
52k
No, featureCounts cannot change the XS tag to a different tag, because that would change the information in the output. featureCounts needs…
Votes
Answer: Mapping Between GenBank ID's and Uniprot
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A: Relations used in GO.db GOBPANCESTOR
Relations used in GO.db GOBPANCESTOR
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