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MLSeq
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Data preparation and Machine learning on time course RNAseq data
machine learning
deep learning
RNAseq
MLSeq
5.3 years ago
A
▴ 40
0
votes
0
replies
951
views
MLSeq plot results
MLSeq
7.4 years ago
jonessara770
▴ 10
0
votes
0
replies
1.6k
views
Hierarchical Random Forest classifier
rnaseq
machinelearning
random forest
mlseq
8.3 years ago
anthony.hawkins
▴ 10
0
votes
2
replies
1.2k
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MLSeq package: using z-score normalized data as input?
MLSeq
8.6 years ago • updated 8.5 years ago
philipp24
▴ 30
0
votes
3
replies
1.5k
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MLSeq Mathematical Concepts
Classification
edgeR
DESeq
MLSeq
Classification
edgeR
DESeq
MLSeq
updated 10.0 years ago by
Wolfgang Huber
★ 13k • written 10.0 years ago by
Dario Strbenac
★ 1.5k
5 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Comment: [Mfuzz] Error in cmeans(exprs(eset)
by
Caio
• 0
You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The left plot indicates you should use genome segmentation. It is what is called "nonstationary" meaning it looks like there are distinct r…
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
gene_bioconductor
▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
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Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
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