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MNNCorrect
•
reset
6
votes
1
reply
3.1k
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Downstream analysis after using mnnCorrect()
scran
mnncorrect
updated 6.2 years ago by
Aaron Lun
★ 28k • written 6.2 years ago by
Dave Tang
▴ 210
0
votes
5
replies
2.3k
views
[MnnCorrect] In case of known subpopulations
scran
single-cell
mnncorrect
rnaseq
6.8 years ago
Jens Preussner
▴ 30
1
vote
2
replies
2.2k
views
keep getting this error "number of rows is not the same across batches" even though my 2 matrices have the same row number
mnncorrect
batch effect
scran
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
sara.nejat
• 0
5
votes
4
replies
2.0k
views
How to apply limma-trend or voom to batch corrected single cell data? (non-integer and negative values included)
MNNCorrect
scMerge
limma-trend
updated 3.0 years ago by
Gordon Smyth
50k • written 3.0 years ago by
hainct
• 0
4
votes
4
replies
1.8k
views
Some questions for remove batch effect by using mnnCorrect
batch effect
single cells
mnnCorrect
scran
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
xingxd16
▴ 20
2
votes
2
replies
1.8k
views
[MnnCorrect] Remove batch effects but keep condition effects
single-cell
scran
mnncorrect
rnaseq
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
John Reid
▴ 10
1
vote
2
replies
1.4k
views
SCRAN - Question: Error when calling cosineNorm through fastMNN
SCRAN
fastMNN
mnnCorrect
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
tobi
• 0
2
votes
1
reply
1.0k
views
batchelor batch correction correction runs into errors
batchelor
batch-correction
mnncorrect
fastmnn
rna-seq
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
rmf
▴ 20
8 results • Page
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Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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