Bioconductor MakeOrgPackageFromNCBI

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annotationforge makeorgpackagefromncbi

6.8 years ago gabciamm • 0

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AnnotationForge makeOrgPackageFromNCBI gene ontology edgeR pathwayanalysis

updated 13 months ago by L ▴ 50 • written 4.2 years ago by babak.loghmani ▴ 20

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annotation annotationforge annotationdbi makeorgpackagefromncbi

9.3 years ago oliver.tills • 0

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makeorgpackagefromncbi

updated 3.0 years ago by Vincent J. Carey, Jr. 6.7k • written 7.9 years ago by cagenet34 ▴ 20

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AnnotationForge makeOrgPackageFromNCBI

updated 7 months ago by James W. MacDonald 66k • written 7 months ago by mat149 ▴ 70

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 4.0 years ago by James W. MacDonald 66k • written 4.0 years ago by chefer • 0

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OrganismDbi makeOrgPackageFromNCBI

updated 4 months ago by James W. MacDonald 66k • written 4 months ago by dissikratzl • 0

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makeOrgPackageFromNCBI

updated 14 months ago by James W. MacDonald 66k • written 14 months ago by irene.artuso • 0

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annotationforge makeOrgPackageFromNCBI

updated 4.2 years ago by James W. MacDonald 66k • written 4.2 years ago by lesneski • 0

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makeorgpackagefromNCBI s.pombe sqliteExecStatement

9.6 years ago Parham • 0

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…

Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0

I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …

Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

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Comment: LRT, more than two conditions and pairwise comparisons

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Comment: DESeq2- Mysterious interaction suppresses DEGs

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