Bioconductor MakeOrgPackageFromNCBI

Showing : makeOrgPackageFromNCBI • reset

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418

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AnnotationForge makeOrgPackageFromNCBI

updated 6 weeks ago by James W. MacDonald 64k • written 6 weeks ago by mat149 ▴ 70

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418

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makeOrgPackageFromNCBI

updated 8 months ago by James W. MacDonald 64k • written 9 months ago by irene.artuso • 0

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844

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MakeOrgPackageFromNCBI NCBI SQL AnnotationForge

updated 3.6 years ago by James W. MacDonald 64k • written 3.6 years ago by chefer • 0

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1.4k

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AnnotationForge makeOrgPackageFromNCBI gene ontology edgeR pathwayanalysis

updated 7 months ago by L ▴ 50 • written 3.7 years ago by babak.loghmani ▴ 20

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907

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annotationforge makeOrgPackageFromNCBI

updated 3.8 years ago by James W. MacDonald 64k • written 3.8 years ago by lesneski • 0

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annotationforge makeorgpackagefromncbi

6.4 years ago gabciamm • 0

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1.5k

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makeorgpackagefromncbi

updated 2.5 years ago by Vincent J. Carey, Jr. 6.7k • written 7.4 years ago by cagenet34 ▴ 20

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annotation annotationforge annotationdbi makeorgpackagefromncbi

8.9 years ago • updated 8.8 years ago oliver.tills • 0

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makeorgpackagefromNCBI s.pombe sqliteExecStatement

9.1 years ago Parham • 0

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Comment: Why is DMRcate not available for Bioconductor version 3.18? by Daniel E. Weeks ▴ 20

Thank you for the explanation and contacting the DSS package authors.

Comment: Why is DMRcate not available for Bioconductor version 3.18? by shepherl 3.6k

The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…

Answer: GOslim missing GO term by James W. MacDonald 64k

I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading. ``` > ids<- "GO:0002831" > slim <…

Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…

Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k

If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…

Votes

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k