Bioconductor Mas5

Showing : Mas5 • reset

1

vote

5

replies

854

views

Mas5 normalization Exprs

updated 5.6 years ago by James W. MacDonald 62k • written 5.6 years ago by kritikamish99 ▴ 10

0

votes

8

replies

1.3k

views

mas5 affy mas5 affy mas5 mas5calls affy

updated 7.5 years ago by James W. MacDonald 62k • written 7.5 years ago by suarez.samuel • 0

3

votes

11

replies

3.0k

views

bioconductor mas5 perfectmatch affymetrixchip filter

updated 8.3 years ago by James W. MacDonald 62k • written 8.3 years ago by svlachavas ▴ 810

3 results • Page 1 of 1

Recent ...

Replies

Comment: Visualization of negative log CPM values by Gordon Smyth 47k

Sorry, but some of the things you say are not correct. > compound B has 2 statistically significant genes that are up-regulated No, there…

Comment: Visualization of negative log CPM values by ATpoint ★ 2.8k

Applies to both.

Comment: Visualization of negative log CPM values by Sabiha ▴ 10

@atpoint OK, are you referring to the `log2(cpm+1)` or `log2(tpm+1)`

Comment: Visualization of negative log CPM values by Sabiha ▴ 10

@gordonsmyth noted. Related to the graphs above, the table below is the output from `limma`, and compound B has 2 statistically significant…

Comment: Visualization of negative log CPM values by Gordon Smyth 47k

> negative scale might perhaps indicate gene is too low to be really expressed. Yes, negative logCPMs do mean that the gene is expressed a…

Votes

Comment: Visualization of negative log CPM values

Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?

Filtering low intensity probes in microarray data

Comment: Visualization of negative log CPM values

Adjusting for baseline when having longitudinal data, mixed model and no treatment

Awards • All

Popular Question to ioannis.vardaxis ▴ 30

Scholar to Erqiang Hu ▴ 50

Popular Question to Matthew Thornton ▴ 350

Scholar to Hervé Pagès 16k