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0
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4
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Add mask to BSgenome
Mask
BSgenome.Hsapiens.UCSC.hg38.masked
5 months ago
shraddha.pai
• 0
0
votes
5
replies
2.7k
views
How to prevent readDNAStringSet() function from switching masked sequences (lowercase) to uppercase sequence?
biostrings
mask
repeatmasker
DNA
updated 3.8 years ago by
ivantsers
• 0 • written 7.0 years ago by
beausoleilmo
• 0
0
votes
3
replies
2.1k
views
The way to window over sequences of a DNAStringSet
biostrings
window
mask
views
updated 8.9 years ago by
Hervé Pagès
16k • written 8.9 years ago by
ben.ward
▴ 30
0
votes
0
replies
1.1k
views
maskedBSgenome - cannot enable masks
mask
bsgenome
9.0 years ago
kielpinski
• 0
4 results • Page
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Recent ...
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Comment: Question about using LRT test for time course experiments with DESeq2
by
Denise
• 0
Not really, we are testing some toxic compounds to identify genes that are activated in response to the toxic exposure. Genes that change o…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi again, Thank you for the response! Can you expound on why it is not a good idea? I realize that the expression levels/differential expr…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
No, that's not a good idea at all. You should be doing a meta-analysis with these data rather than trying to combine like that. `GeneMeta` …
Answer: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
James W. MacDonald
67k
Check the help page for `KEGGFrame`. Your columns are out of order.
Comment: Question about using LRT test for time course experiments with DESeq2
by
James W. MacDonald
67k
You are testing the interaction, so you are asking for those genes that change at any time *differently, depending on the treatment*. If co…
Votes
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Answer: DESeq Input from Salmon + tximport/tximeta
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