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Michael Love
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DESeq2 time course with two genotypes
deseq2
timecourse
michael love
multiple time points
6.0 years ago
cp1015
• 0
0
votes
4
replies
1.0k
views
DESeq2 Design Formula
DESeq2
michael love
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
gkuffel
▴ 10
0
votes
1
reply
1.5k
views
DESeq2 PCA plotting
deseq2
michael love
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
sam.far.7
• 0
1
vote
11
replies
2.2k
views
Need help with DESeq2's contrast feature
deseq2
michael love
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
Ashu
▴ 10
2
votes
3
replies
2.0k
views
DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2
timecourse
multiple time points
mlr
michael love
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
ap874
• 0
5
votes
10
replies
14k
views
Constructing tx2gene for Salmon txImport Quantification using Gencode Mouse Transcript Annotation
Michael Love
Salmon
tximport
tx2gene
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
pvd2107
▴ 30
6 results • Page
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Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 4.9k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 4.9k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20
by
eja.gaasa2e.r.m
• 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Answer: Gatins Set error
by
James W. MacDonald
68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins?
by
Gordon Smyth
53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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