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michael love
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DESeq2 time course with two genotypes
deseq2
timecourse
michael love
multiple time points
4.6 years ago
cp1015
• 0
0
votes
4
replies
721
views
DESeq2 Design Formula
DESeq2
michael love
updated 5.3 years ago by
Michael Love
41k • written 5.3 years ago by
gkuffel
▴ 10
0
votes
1
reply
1.0k
views
DESeq2 PCA plotting
deseq2
michael love
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
sam.far.7
• 0
0
votes
11
replies
1.5k
views
Need help with DESeq2's contrast feature
deseq2
michael love
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
Ashu
▴ 10
2
votes
3
replies
1.5k
views
DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2
timecourse
multiple time points
mlr
michael love
updated 5.8 years ago by
Michael Love
41k • written 5.8 years ago by
ap874
• 0
5
votes
10
replies
11k
views
Constructing tx2gene for Salmon txImport Quantification using Gencode Mouse Transcript Annotation
Michael Love
Salmon
tximport
tx2gene
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
pvd2107
▴ 30
6 results • Page
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Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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