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Multi-omics
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Job:
Computational Biology Contractor - Chinook Therapeutics
Patient_stratification
Multi-omics
RNA-seq
Kidney_Disease
23 months ago
eolson
• 0
0
votes
0
replies
762
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Job:
Computational 4D and single-cell expression analysis of animal development and regeneration
multi-omics
imaging
single-cell analysis
Job
5.0 years ago
Wolfgang Huber
★ 13k
0
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0
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1.0k
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Job:
Research Fellow, Computational Multi-Omics of Cancer (University College London)
cancer
multi-omics
genomic instability
machine learning
data integration
Job
5.2 years ago
msecrier
▴ 20
2
votes
0
replies
1.0k
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Job:
Research Fellow, Computational Cancer Genomics (University College London)
cancer
genomics
machine learning
data integration
multi-omics
Job
5.4 years ago
msecrier
▴ 20
4 results • Page
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Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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swbarnes2
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Stephanie M. Gogarten
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Jonathan
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Frederico Moraes Ferreira
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richardallenfriedmanbrooklyn
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