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Showing :
data integration
•
reset
2
votes
4
replies
925
views
Joint pathway Analysis using both gene and metabolite data sets
data integration
gene
metabolite
4.0 years ago
emisecherre
• 0
1
vote
0
replies
734
views
Job:
Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
metabolomics
lipidomics
clinical research
data integration
biostatistics
Job
4.1 years ago
Tommi Suvitaival
▴ 10
0
votes
0
replies
890
views
Job:
Bionformatician Position / Heidelberg
neuroscience
data integration
transcriptomics
Job
5.0 years ago • updated 4.9 years ago
slezak
• 0
0
votes
0
replies
992
views
Job:
Research Fellow, Computational Multi-Omics of Cancer (University College London)
cancer
multi-omics
genomic instability
machine learning
data integration
Job
5.0 years ago
msecrier
▴ 20
2
votes
0
replies
964
views
Job:
Research Fellow, Computational Cancer Genomics (University College London)
cancer
genomics
machine learning
data integration
multi-omics
Job
5.1 years ago
msecrier
▴ 20
0
votes
28
replies
3.1k
views
Job:
Postdoc on integrating and analyzing new transcriptome types in the Bgee database
rnaseq
data integration
single-cell
pacbio
across species
Job
6.0 years ago
bgee
• 0
0
votes
0
replies
1.4k
views
News:
Pathview Web server published in NAR
pathway analysis
visualization
data integration
omics
pathview
News
6.9 years ago • updated 6.8 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.1k
views
Job:
PhD Position in Bioinformatics
bioinformatics
protein
variantannotation
data integration
Job
7.3 years ago
stephan.pabinger
• 0
0
votes
0
replies
1.7k
views
Job:
Data scientist/bioinformatician - Paris
Genomics
metabolomics
biostatistics
data integration
Job
8.4 years ago
David Enot
▴ 30
0
votes
0
replies
1.7k
views
Job:
Research Scientist in Bioinformatics/Statistical Genomics, Max Planck Institute, Nijmegen, Netherlands
job
rnaseq
rna-seq
genomics
data integration
Job
8.5 years ago
clyde.francks
• 0
0
votes
0
replies
1.2k
views
Possible(validated) methodology implemented in R for integrating and analyzing clinical data with gene expression data in R
data integration
clinicaldata
gene expression data
PET
8.5 years ago
svlachavas
▴ 830
1
vote
0
replies
2.2k
views
Job:
Postdoctoral/Senior Scientist Position in New York City- Mount Sinai School of Medicine
genomics
data integration
job
ngs
computational biology
Job
8.8 years ago
supindab
▴ 10
0
votes
0
replies
1.6k
views
Machine learning methods for feature selection and possible correlation with clinical data
machinelearning
clinicaldata
biomarkers
data integration
bioconductor
8.9 years ago
svlachavas
▴ 830
1
vote
0
replies
1.9k
views
Job:
PhD position - Heidelberg: Bioinformatic analysis of high-throughput and image-based RNAi screening data
high-throughput screening
RNAi
image analysis
data integration
visualization
Job
9.0 years ago
e.schmidt
▴ 10
0
votes
2
replies
1.5k
views
Possible Data integration of molecular data(transcriptomic) and imaging data from the same patients in R
data integration
microarray
bioconductor
affymetrix
biomarkers
updated 9.0 years ago by
Wolfgang Huber
★ 13k • written 9.0 years ago by
svlachavas
▴ 830
15 results • Page
1 of 1
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Replies
Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Votes
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
C: How to check that the reads in two fastq files are in the same order
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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Gordon Smyth
50k
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rocanja
▴ 60
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rproendo
▴ 20
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Wolfgang RAFFELSBERGER
▴ 140
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Dario Strbenac
★ 1.5k
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