Bioconductor NCBI GEO

Showing : NCBI GEO • reset

votes

replies

3.1k

views

NCBI GEO

updated 4.2 years ago by SAn • 0 • written 8.9 years ago by maedakus ▴ 10

votes

replies

1.4k

views

geoquery ncbi geo biobase

6.1 years ago cschot3 • 0

votes

replies

2.1k

views

limma differential gene expression ncbi geo affymetrix microarrays

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Francesca McGrath • 0

votes

2.0k

views

frma barcode geneexpression gsm ncbi geo

updated 7.2 years ago by Matthew McCall ▴ 830 • written 7.2 years ago by diana.elassal • 0

votes

replies

1.4k

views

limma microarray bioconductor ncbi geo

updated 8.0 years ago by Gordon Smyth 52k • written 8.0 years ago by kevin.m.hao ▴ 10

votes

replies

4.4k

views

geoquery ncbi geo geo data

8.2 years ago fongchunchan ▴ 30

6 results • Page 1 of 1

Recent ...

Replies

Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Awards • All