Bioconductor Nested

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607

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DESeq2 multifactorial nested

updated 22 months ago by Basti ▴ 780 • written 22 months ago by jd • 0

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1.3k

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nested DESeq2

updated 2.9 years ago by Michael Love 43k • written 3.1 years ago by yampolsk • 0

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1.3k

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deseq2 Phyloseq Nested

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by mpuli011 • 0

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1.0k

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deseq2 Paired Nested

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by julia.chariker ▴ 10

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1.2k

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deseq2 nested de

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by gaio.transposon • 0

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1.5k

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edgeR nested glm glmQLFit

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.8 years ago by jcalis ▴ 10

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2.7k

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edger nested design matrix differential expression

updated 9.9 years ago by Aaron Lun ★ 28k • written 9.9 years ago by Mauve • 0

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2.1k

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edger nested estimatedispersions

10.0 years ago • updated 9.9 years ago Mauve • 0

8 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

A: Linear regression in DESeq2

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

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