Bioconductor Nested

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659

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DESeq2 multifactorial nested

updated 2.0 years ago by Basti ▴ 780 • written 2.0 years ago by jd • 0

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1.4k

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nested DESeq2

updated 3.1 years ago by Michael Love 43k • written 3.2 years ago by yampolsk • 0

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1.4k

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deseq2 Phyloseq Nested

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by mpuli011 • 0

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1.1k

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deseq2 Paired Nested

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by julia.chariker ▴ 10

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1.3k

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deseq2 nested de

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by gaio.transposon • 0

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1.6k

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edgeR nested glm glmQLFit

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by jcalis ▴ 10

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2.7k

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edger nested design matrix differential expression

updated 10.1 years ago by Aaron Lun ★ 28k • written 10.1 years ago by Mauve • 0

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2.2k

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edger nested estimatedispersions

10.1 years ago Mauve • 0

8 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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