Bioconductor Nested

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796

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DESeq2 multifactorial nested

updated 2.7 years ago by Basti ▴ 780 • written 2.7 years ago by jd • 0

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1.7k

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nested DESeq2

updated 3.8 years ago by Michael Love 43k • written 3.9 years ago by yampolsk • 0

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deseq2 Phyloseq Nested

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by mpuli011 • 0

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1.3k

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deseq2 Paired Nested

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by julia.chariker ▴ 10

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1.5k

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deseq2 nested de

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by gaio.transposon • 0

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1.8k

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edgeR nested glm glmQLFit

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by jcalis ▴ 10

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edger nested design matrix differential expression

updated 10.8 years ago by Aaron Lun ★ 29k • written 10.8 years ago by Mauve • 0

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2.4k

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edger nested estimatedispersions

10.8 years ago Mauve • 0

8 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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