Bioconductor Nested

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420

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DESeq2 multifactorial nested

updated 13 months ago by Basti ▴ 780 • written 13 months ago by jd • 0

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1.1k

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nested DESeq2

updated 2.3 years ago by Michael Love 42k • written 2.4 years ago by yampolsk • 0

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1.0k

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deseq2 Phyloseq Nested

updated 4.1 years ago by Michael Love 42k • written 4.1 years ago by mpuli011 • 0

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775

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deseq2 Paired Nested

updated 4.3 years ago by Michael Love 42k • written 4.3 years ago by julia.chariker ▴ 10

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1.0k

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deseq2 nested de

updated 4.5 years ago by Michael Love 42k • written 4.5 years ago by gaio.transposon • 0

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1.2k

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edgeR nested glm glmQLFit

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by jcalis ▴ 10

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2.5k

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edger nested design matrix differential expression

updated 9.2 years ago by Aaron Lun ★ 28k • written 9.2 years ago by Mauve • 0

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1.8k

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edger nested estimatedispersions

9.3 years ago Mauve • 0

8 results • Page 1 of 1

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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k

The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.

Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k

From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …

Comment: deseq2 results by ATpoint ★ 4.1k

> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…

Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k

It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …

Votes

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

Answer: Cannot connect to ExperimentHub server

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Scholar to Robert Castelo ★ 3.3k

Popular Question to Gyan Prakash Mishra ▴ 10